Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq7 105 5e-18 >seq7 Length=1169068 Score = 105 bits (116), Expect = 5e-18 Identities = 265/394 (67%), Gaps = 13/394 (3%) Strand=Plus/Minus Query 111721 TGATTTAAATAAACATGCGCATCTCCTA-TACAATGGATCAATTCCCAAGGCTCCAAACC 111779 ||||| ||||||||| |||| ||| | |||| || || ||||| || | ||| Sbjct 995824 TGATTATTATAAACATGAGCATTTCCCAATACA-TGTATAAATTCAGCTGGTTGTAAATT 995766 Query 111780 AGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACC 111839 | | ||||| ||||| ||||| | || | || |||||| || ||||| ||||| Sbjct 995765 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACC 995706 Query 111840 TAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATA 111899 || || | ||| | ||||||||||| | |||||||| ||| | | ||||| Sbjct 995705 AAGACCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATA 995646 Query 111900 AAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAGGGTCC---CCA 111956 ||||||||| | | |||||||||||| |||||||| || | | | | ||| Sbjct 995645 AAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCA 995586 Query 111957 TGCACACATGATCATCCTTCTGC-TGTAGCGATTATGTTCAATGTCGTGTATGACATTCA 112015 |||||| | || || | ||| | ||| | ||| | || ||| | ||| | ||| Sbjct 995585 TGCACATAAAATAATTCGTCTACATGTCG-GATCGTTTTTAATTAAATTTATAATATTTT 995527 Query 112016 AGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTG-ACATCCAGTGTATGTT--GCCC 112072 | ||| || | |||||| | ||||||| || || | ||| ||||| || || | Sbjct 995526 TTAACTGATCAACACCTTTATCTTTATAATCAGCATGCATATC---TGTATATTCAGCAC 995470 Query 112073 CATAGTGTCTCCATTGGAATCCATAAATAGGCCC 112106 || |||| |||||||| ||||| ||||| || || Sbjct 995469 CAAAGTGCCTCCATTGAAATCCGTAAATTGGACC 995436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391945413703357