Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq10 102 4e-17 >seq10 Length=1634725 Score = 102 bits (112), Expect = 4e-17 Identities = 184/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 65117 AAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAA 65176 ||||| |||||||||||||| | ||| | || ||||| ||||| | | | ||| Sbjct 515402 AAATTTATATTGTTTGAACCGACAAATGTTTGCGCCATATTTATAATAGTTTGTTGTAAT 515343 Query 65177 CTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACT 65236 | |||||| ||||||||| | |||||| | | ||| ||| || || || ||| Sbjct 515342 GATGATTCACCATGATGATATGCACTATGTTCTGCAATATAACCAACAAGCTGCGCGACT 515283 Query 65237 TTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATT 65296 || ||| || ||||||| ||||||| | ||| || | ||| | | | | Sbjct 515282 TTACATTCATTTCTTAAATTTCTTTTAAAGCAACCATATAAAACTTTTCTTTGTCCTGGT 515223 Query 65297 TTCAATCCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATG 65356 ||| |||||||||| | ||| || || ||||| || ||||||| | || ||| ||| Sbjct 515222 TTCCATCCATCCATAATATTTGGTATACTTCTTTCTGTATCATATCTAGAATAATATATT 515163 Query 65357 AATTCTTTGTTAATAAATTCTTCATATGA 65385 |||||||| || | ||| || | |||||| Sbjct 515162 AATTCTTTATTTACAAAATCATAATATGA 515134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235679887978350