Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 6e-16 seq6 96.9 2e-15 >seq11 Length=1720574 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | || ||| |||||||||||||| || || | ||||| | ||||| Sbjct 1496423 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1496482 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| || || || ||||| | ||||| || || || | ||| || || ||| | Sbjct 1496483 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1496542 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||||| |||||| | |||||| || || || || | || || ||||| Sbjct 1496543 AT-TTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1496601 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||||||| ||||| ||||| || ||||| || Sbjct 1496602 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1496634 >seq6 Length=916956 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||||||||| || || || ||||||| | ||||| | |||||| |||||||| Sbjct 466383 TCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAA 466324 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 ||||| | ||||| || || || | || || || ||| ||| ||| | |||||| Sbjct 466323 ATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCT-TGAATTTTAGCTTTAACATT 466265 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || || ||| || || | || || ||||| |||||||| ||||| || Sbjct 466264 TTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTAC 466205 Query 34695 AAAAATCTGCAT 34706 ||||||||||| Sbjct 466204 GAAAATCTGCAT 466193 Score = 91.5 bits (100), Expect = 9e-14 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || |||||||||||||| || || | ||||| ||||||| | |||||| || || || Sbjct 466611 TCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAA 466552 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-A 34634 ||||| | ||||| || || || | || || || ||| ||| ||| | ||||||| Sbjct 466551 ATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCT-TGAATTTTGGCTTTAACGTT 466493 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || ||| || || || | || || ||||| |||||||| ||||| || Sbjct 466492 TTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTAC 466433 Query 34695 AAAAATCTGCAT 34706 ||||| ||||| Sbjct 466432 GAAAATTTGCAT 466421 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||||||||| ||||| || ||||||| | || || | |||||| || || || Sbjct 466155 TCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAA 466096 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 ||||| | ||||| || || || | || || || ||| ||| ||| | |||||| Sbjct 466095 ATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCT-TGAATTTTAGCTTTAACATT 466037 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || || || || || | || || ||||| |||||||| ||||| || Sbjct 466036 TTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTAC 465977 Query 34695 AAAAATCTGCAT 34706 ||||||||||| Sbjct 465976 GAAAATCTGCAT 465965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729450405087