Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 >seq7 Length=1169068 Score = 91.5 bits (100), Expect = 1e-13 Identities = 208/311 (67%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 126080 ATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCC 126139 |||||| ||||| ||| |||| ||| ||| ||| || |||||| | | | Sbjct 995825 ATGATTATTATAAACATGAGCATTTCCCAATACATGTATAAATTCAGCTGGTTGTAAATT 995766 Query 126140 ACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACC 126199 |||| ||| ||| | | || ||| | || || ||| ||||||||||| |||||||| Sbjct 995765 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACC 995706 Query 126200 TAAAAATATATCAGCACTTCTTTGATA--TAATTGACAATTTAATTTACCCTCTTGTACG 126257 | | || |||| | ||||||||| |||| ||| |||||| || || || Sbjct 995705 AAGACCTAAATCACAAGATCTTTGATACATAAT--ACATGATAATTTTCCATCAAAAACA 995648 Query 126258 TAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTC 126317 ||||||||| | | | || ||||| |||||||||||| ||| | || | |||| Sbjct 995647 TAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTC 995588 Query 126318 CATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACTGAT 126377 ||||| | | ||| |||| | | | |||| | |||||||| | ||||| | Sbjct 995587 CATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATATTT 995528 Query 126378 TTTAATTGATC 126388 ||||| ||||| Sbjct 995527 TTTAACTGATC 995517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408598205788073