Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq11 140 8e-28 seq6 89.7 1e-12 >seq11 Length=1720574 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||||||||| |||||||| || | | || ||||||||||| | || || || Sbjct 1496435 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1496494 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | | |||||| ||||| |||| |||||| || || ||||| ||| ||| Sbjct 1496495 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1496554 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || || ||||| |||||| || |||||||| || ||||| || | || Sbjct 1496555 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1496614 Query 211098 TTTACAAACACCTGCATTTT 211117 |||||||| | |||||||| Sbjct 1496615 TTTACAAAGATTTGCATTTT 1496634 >seq6 Length=916956 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| | || || |||||||| |||||||| || | | || ||||| Sbjct 465952 TCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCC 465893 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||| || || || || | | |||||| ||||| || | ||||| || Sbjct 465892 ATCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTT 465833 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| || ||||| ||||| || || ||||| || || || || Sbjct 465832 ATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTAT 465773 Query 211079 CGTCTTTCC 211087 || ||||| Sbjct 465772 AGTTTTTCC 465764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151420786235