Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6 116 9e-21 seq3 93.3 1e-13 >seq6 Length=916956 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | |||||||| | | ||||| ||||| |||| || || ||| Sbjct 466161 GTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCA 466102 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | || |||||| || || ||||||||||| || ||||| || ||| || || Sbjct 466101 GCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAAT-TTTAGCTTT 466043 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | || || || || || || ||||| Sbjct 466042 AACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTCCCGGTTAAAGT 465983 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| ||| | ||||| Sbjct 465982 TTTTACGAAAATCTGCAT 465965 Score = 114 bits (126), Expect = 3e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||| ||||||||||| | ||||| || | | ||||| |||||||||| || Sbjct 466396 GTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTG 466337 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || || || | || |||||| || || ||||||||||| || ||||| || || Sbjct 466336 TTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAAT-TT 466278 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| ||| ||||| || || | || || || | ||||| || || || | Sbjct 466277 TAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGG 466218 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 | |||||||||| ||| | ||||| Sbjct 466217 TTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || || || | || ||||| || ||||||| || || ||| Sbjct 466617 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCA 466558 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | || |||||| || || || |||||||| || ||||| || ||| || || Sbjct 466557 GCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAAT-TTTGGCTTT 466499 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||| || || ||||| | ||| || || | || || || || || || || || Sbjct 466498 AACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGT 466439 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| ||| | |||||| Sbjct 466438 TTTTACGAAAATTTGCAT 466421 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || || || | || ||||| |||||||||| ||||| ||| Sbjct 465933 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGCTTTCCA 465874 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || |||||| || || || |||||||| || ||||| || ||| || || Sbjct 465873 GCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAAT-TTTAGCTTT 465815 Query 225636 CACAGCTTCGATGGTGTCTGA 225656 ||| ||| ||||| || || Sbjct 465814 AACATTTTCAATGGTATCGGA 465794 >seq3 Length=624158 Score = 93.3 bits (102), Expect = 1e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||||||||| || |||||||| ||||| ||||||||||| |||||| Sbjct 552684 AATATTTGACCATCAGTAATTGAAATAACATTGGTAGGAATATAAGCAGATACATCATTA 552625 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTA 4561 | |||||| | ||||||||| || |||| Sbjct 552624 TTTAATGTTTCAATAACAGGTAATGCAGTTA 552594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530604107066