Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq10 219 4e-52 >seq10 Length=1634725 Score = 219 bits (242), Expect = 4e-52 Identities = 591/889 (66%), Gaps = 25/889 (3%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| ||||||| || || | |||| |||||| |||||||| ||||| |||| ||| Sbjct 1455790 AACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAA 1455731 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || ||||| || ||| ||||| ||| | | || ||| || || Sbjct 1455730 AGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAA 1455671 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | ||||| ||||| |||||||| || || || ||| ||| | || || Sbjct 1455670 ACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCAT 1455611 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481 ||||||||| ||||| |||| | || ||| ||| || ||| | | || || Sbjct 1455610 TCCAATTAAA-TCACAAGGTAAAG---AT-TCACAAATAAATGATCTTTCTACTTCAACT 1455556 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 |||||| | | ||||| || | |||| | | ||||||| | || | | | | Sbjct 1455555 GCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCTATAA 1455496 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | |||||| |||||| || || ||||| ||||| ||||||| ||| ||| ||| Sbjct 1455495 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAAT 1455436 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || | | | | | ||||||| ||||||||| || ||| ||| | Sbjct 1455435 GTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTA 1455376 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || ||||| ||||| || ||| ||||| | || | || ||| | | | Sbjct 1455375 AATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCG---TA 1455319 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTT-TTTCTTAACGCACGGAATTGTGTATAT 4780 || || |||||||| |||||| ||||| ||| ||| || || || | | || Sbjct 1455318 TCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCT-GGTATATTTTCAAT 1455260 Query 4781 AGCGTTAAATAA-TTTACTTT---TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 ||| | |||||| |||| | | |||| || | ||||||| | || |||| || Sbjct 1455259 AGCATGAAATAAATTTAATCTCTCTTTCTCATCCCT----AATATAATTATCAATTAATA 1455204 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 ||||| ||||||| ||||||||||| | ||| || ||||| | ||||| | | | Sbjct 1455203 AACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGG 1455144 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCG 4955 |||| ||| ||| ||||| | ||||| || ||| |||| ||||| |||||| || Sbjct 1455143 CTTCAATTATTTGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCA 1455085 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||||| ||||||||||| || | ||||| |||||| | | ||| | || | | Sbjct 1455084 TCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAAT 1455025 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 |||| ||| |||||| | | |||||| | ||||||| |||||||||| || || Sbjct 1455024 TTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCC 1454965 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTA 5124 || |||||||| || | | ||| | ||||||||| ||| ||| ||| Sbjct 1454964 TCAGCTTTTTTATAAAAATTCCATACTTCAGGATACATAATAGGATGTA 1454916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049397017987