Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 437 1e-117 seq10 232 9e-56 >seq6 Length=916956 Score = 437 bits (484), Expect = 1e-117 Identities = 985/1463 (67%), Gaps = 39/1463 (3%) Strand=Plus/Minus Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 ||||| ||||| ||||||||||| | |||||||| ||||| |||||||| | || ||| Sbjct 509181 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 509122 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || |||||||||||||| | | | | |||||| | || ||| | || ||||| | | Sbjct 509121 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 509062 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAA---CATCCCAAAGATCGTATTGT 77333 |||| | | |||||||||| | | ||| ||| ||| | ||| ||||| Sbjct 509061 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 509002 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT 77393 | ||||| | || || || | ||||| |||||| ||||| | || || Sbjct 509001 AATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTGCC 508942 Query 77394 AGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAAT-CTTCTTATTGAG 77452 | |||| | | ||| || || | ||||| || ||||| || || ||||| ||| | Sbjct 508941 AATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAA 508883 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 |||| ||||| | ||| | ||||| |||||| ||||| | |||||||||||| Sbjct 508882 TTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCC 508823 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 || ||||| || ||||||||||||||||| ||||| || ||| |||||| || || Sbjct 508822 TTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGG 508763 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 ||||||||| | || |||||||||| | ||||||| || | |||| | || | Sbjct 508762 ATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATA 508703 Query 77633 TAGTTTAAGAAAATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATAGA 77686 || ||| ||||| ||| | || ||||| |||||| || || || || || Sbjct 508702 TAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGA 508643 Query 77687 TGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAG 77746 |||| ||||||||| ||||| |||| || | ||||| || || || ||||| Sbjct 508642 AGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAA 508583 Query 77747 ATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTT 77806 |||||| ||||| || || || | ||||| ||| || || ||| |||| || || Sbjct 508582 ATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTT 508523 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 77866 ||| | ||| | || || ||||| || || | || | ||||| | || || | Sbjct 508522 ATATAACATATATGGTACACCAGTTTCTATTTG-GCTTTG-TAATA---TAGCAAACCA- 508469 Query 77867 TCTAGCTTTT---ATCATAGATTTGTATC---GCCTCTCTCTTTCATATTGAGTATATAG 77920 | | ||| | | || | ||| | || | | ||| ||| |||| ||||||| Sbjct 508468 TAAATCTTGTGCAAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAA 508409 Query 77921 CCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAA 77980 ||||||||| || ||||| ||| || || || ||||| || |||||||| || Sbjct 508408 TTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATTAA 508349 Query 77981 TGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 | ||||| || |||||| |||| ||||||||| | |||||||| ||| | |||| Sbjct 508348 AGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 508289 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 ||||| ||| || | ||| |||||| || || ||| ||| | | ||| | ||| || Sbjct 508288 AAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 508229 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160 | |||||| |||||||||||||| | ||||| || | | || || ||| || Sbjct 508228 AAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCC 508169 Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220 || ||||||| |||||| || || | |||| ||||||| ||||| || | | ||| || Sbjct 508168 ACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATT 508109 Query 78221 AGATGTTCCATTTGTTCCAGAAAT---ATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||| | ||||| ||||| || | || || | || | ||||| || || | Sbjct 508108 TGATATACCATTAGTTCCTCTGATGTAAGAATTTTGA---GCTCTAATAT--CT--TGTA 508056 Query 78278 TATC----CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333 | | ||||| |||||||| | ||| || | || || | || ||||| || Sbjct 508055 CAGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAA 507996 Query 78334 AGATACCCTCTATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 | ||||| ||||| ||| ||| || ||| || ||| || ||||||||| | Sbjct 507995 ATATACCTTCTATTGAATCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGGT 507937 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGT 78452 ||||| | |||||||||||| |||| ||||| ||||| |||||| || | | Sbjct 507936 CTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATT 507877 Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512 | || || ||||| | ||| ||| | || | ||| ||||||| | ||| | | Sbjct 507876 AAATGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTC 507817 Query 78513 ATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTT 78572 || || | ||||||||| | ||||| | |||||||| || || ||||| || || Sbjct 507816 ATTAATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTT 507757 Query 78573 TCCAAAGTTTTAAAACCAAAATA 78595 || || |||||||| |||||||| Sbjct 507756 TCTAATGTTTTAAATCCAAAATA 507734 >seq10 Length=1634725 Score = 232 bits (256), Expect = 9e-56 Identities = 393/562 (70%), Gaps = 12/562 (2%) Strand=Plus/Minus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 |||||||| |||||| || | ||||||||||||||||| ||||| ||| |||| Sbjct 1455495 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAAT 1455436 Query 48195 GTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 || | ||| | | ||| | ||||||| | |||||||||||| ||| |||| Sbjct 1455435 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAATATTGCACAAAAACTTCCAC 1455378 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 ||| ||||| ||||| || ||| || || ||| || | || | ||||| Sbjct 1455377 TAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAG--TTCGT 1455320 Query 48313 TG--TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 | |||||| |||||| || || || |||| || || |||| || Sbjct 1455319 ATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAAT 1455260 Query 48371 AGCATTAAAGAGAAAGtttttttCA-TTGCT-ATCTTTAACGTAAGTATCTATTAAAAGA 48428 ||||| ||| | || || | || || || ||| ||| ||| |||| ||||| | | Sbjct 1455259 AGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAA 1455202 Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 ||||| |||| ||||| |||||||||| || || ||||| | ||||| | | ||| Sbjct 1455201 CTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCT 1455142 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCA 48548 || | || ||||| || | ||||| ||| ||||| || ||||||||||||| Sbjct 1455141 TCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCA 1455082 Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA 48608 ||||| ||||||||||||| |||||||| ||||||| |||||| || | | | ||| Sbjct 1455081 CTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTT 1455022 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 | |||| || | ||| |||||| ||||| ||||||||| ||||||||||| ||||| Sbjct 1455021 TCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCA 1454962 Query 48669 GCTTTTTTATACATATTCCATA 48690 ||||||||||| | |||||||| Sbjct 1454961 GCTTTTTTATAAAAATTCCATA 1454940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668461348960