Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 461 1e-124 seq10 219 6e-52 >seq6 Length=916956 Score = 461 bits (510), Expect = 1e-124 Identities = 1036/1533 (68%), Gaps = 49/1533 (3%) Strand=Plus/Minus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 |||||||||||||| ||||| ||| || || | || ||||| ||||| || Sbjct 509227 ATGAGGATTAACAACAAAGAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 509168 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||||||| | |||||||| ||||| |||||||| | |||||||| || |||||||| Sbjct 509167 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAGCTGTTGGCATAGG 509108 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 ||| | | | | |||||| | || ||| | || ||||| | ||||| | | ||| Sbjct 509107 TGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTTTTAATAAATCCCA 509048 Query 75886 ATCCCAA-AGATCTGATGGTACAA---CATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 ||||||| | | | || ||| ||| ||| | ||| |||||| ||||| | || Sbjct 509047 ATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGGC 508989 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAG-TCC-CGTCCTTTTCAGCTAGTTCGCAACT 75999 | || || | ||||| ||| || | ||| | | ||| | || | ||| | Sbjct 508988 TTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT--GCCAATTCAACAGA 508931 Query 76000 CGCCTCTAACGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTAAGATCTTGCGCTT 76058 | ||||| ||| | ||||| || ||||| || || ||||| |||| |||| |||| Sbjct 508930 CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAAT-TCTTTAGCTT 508872 Query 76059 CAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAA 76118 | | ||| | ||||| |||||| ||||||| |||||||| ||| || ||||| | Sbjct 508871 CTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTA 508812 Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 | ||||||||||||||||| ||||| || |||| |||||| || || |||||||| Sbjct 508811 TTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTTC 508752 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 | || |||||||||| | |||||| || | |||| | || | || ||| || Sbjct 508751 TTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTTTAA 508692 Query 76239 AATCAAATT-----TTCCATCTATCA-CAAA----CATATTAAGAGCTATAGATGCTAGA 76288 ||| ||||| || ||||||| |||| |||| | || || || |||| | Sbjct 508691 AATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAAT----GCAATGGAAGCTAAA 508636 Query 76289 TTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTA 76348 |||||||| ||||| |||| || | ||||| || || || |||| |||||| Sbjct 508635 TTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTG 508576 Query 76349 CACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGA 76408 || || || ||||| | ||||| ||| || || ||||||| || ||||| | Sbjct 508575 CATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAAC 508516 Query 76409 ACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCT 76468 | | | || |||||||| || || | || | ||||| | || || | | | || Sbjct 508515 ATATATGGTACACCAGTTTCTATTTG-GCTTTG-TAATATAG---CAAACCA-TAAATCT 508462 Query 76469 TTT---ATTATAGATTTGTATC---GCTTCTCTCTTTCATATTGTGTATATAACCGTTCA 76522 | | | || | ||| | || | || ||| ||| |||| ||||||||| |||| Sbjct 508461 TGTGCAAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCA 508402 Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582 ||||| || ||||| ||| || || |||||||| || || ||||| || | ||| Sbjct 508401 AATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATTAAAGTCCAG 508342 Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642 | || |||||| || | ||||||||| | |||||||| ||| | |||| ||||| | Sbjct 508341 TTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAA 508282 Query 76643 TCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATA 76702 || || | ||| |||||| || || ||| ||| | | ||||| || || | |||| Sbjct 508281 TCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATA 508222 Query 76703 TCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGA 76762 || |||||||||||||| | ||||| || | | ||| || ||| || || ||| Sbjct 508221 TCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGA 508162 Query 76763 TCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTA 76822 |||| |||||| || || | |||| ||||||| ||||| || | | || || ||| || Sbjct 508161 TCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATA 508102 Query 76823 CCATTTGTTCCAGAAAT---ATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 ||||| ||||| || | || || | || | ||||| | || | ||| Sbjct 508101 CCATTAGTTCCTCTGATGTAAGAATTTTGA---GCTCTAATATCTTGTACAGCCACACCT 508045 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || |||||||| ||||| || | ||||| | || ||||| ||| | || || ||| Sbjct 508044 ATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCT 507985 Query 76940 ATACTATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || |||| ||| || ||| || ||| || ||||||||| | ||||| Sbjct 507984 ATTGAATCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGGTCTTGGTGTTCC 507926 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGT 77058 | |||||| |||||||||| |||||||| || |||||| || | || || || || Sbjct 507925 CGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGT 507866 Query 77059 TTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 ||| | | | ||| | ||| | ||| ||||||| || || | ||| || | ||| Sbjct 507865 TTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATG 507806 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178 |||||| ||||| | | | |||||||| || || ||||| || |||| || ||||| Sbjct 507805 CTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTT 507746 Query 77179 AAAACCAAAATAGTTGTA--TGAAAAGTCTCTT 77209 ||| |||||||| | || ||||| |||||| Sbjct 507745 AAATCCAAAATAATCATAATTGAAA--TCTCTT 507715 >seq10 Length=1634725 Score = 219 bits (242), Expect = 6e-52 Identities = 400/576 (69%), Gaps = 20/576 (3%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| |||||| || | ||||||||||||||||| ||||| ||| |||| Sbjct 1455495 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAAT 1455436 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || | ||| | | ||| | | ||||| | ||||||||| || ||| |||| Sbjct 1455435 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAATATTGCACAAAAACTTCCAC 1455378 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG---GCAT 46798 ||| ||||| ||||| ||| || || |||| ||| || | || | | || Sbjct 1455377 TAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTAT 1455318 Query 46799 CATTATGAATCCACCTTTGAGC--CCAATCAGCCTTT-TTCTTTACACAAGGCATTGTTT 46855 |||| ||||| || ||| || || | |||| || |||| || || ||| Sbjct 1455317 CATTT---ATCCA---TTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTT 1455264 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCA-TCACT-ATCTTTAACATATGTATCTATTAA 46913 | ||||||| ||| | || || | || | || ||| ||| ||| |||| ||||| Sbjct 1455263 CAATAGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAA 1455206 Query 46914 AAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCT 46973 | |||||| |||| || || || ||||||| ||| || ||||| | ||||| | | Sbjct 1455205 TAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTT 1455146 Query 46974 TGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCC 47033 |||||| | || ||||| ||| | ||||| || ||||| || |||||||| Sbjct 1455145 GGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCC 1455086 Query 47034 ATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG 47093 ||||||||| ||||||||||| | |||||||| ||||||| |||||||| | | | Sbjct 1455085 ATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAA 1455026 Query 47094 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 ||| | |||| || | ||| |||||| ||||| ||||||||| ||||| ||||| || Sbjct 1455025 TTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGC 1454966 Query 47154 CTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 ||| ||||||||||| | |||||||| ||| |||| Sbjct 1454965 CTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 1454930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934052444480