Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6 105 2e-17 seq11 100 7e-16 >seq6 Length=916956 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 ||| || |||||||| |||||||| || | || ||||| |||||||||| ||| || Sbjct 466390 AGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCC 466331 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 ||| || || | || || || || | | || ||||| || ||||||||||| ||| Sbjct 466330 GGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTT 466271 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | || | | | || || ||| || |||||||| || ||||| || || | ||| Sbjct 466270 AACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGT 466211 Query 152087 CTTCACGAAGACCTGCAT 152104 || ||||| | |||||| Sbjct 466210 TTTTACGAAAATCTGCAT 466193 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||| ||||||||||| | || ||||| ||||| |||| ||| || Sbjct 466161 GTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCA 466102 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | || || || || | | || ||||| || ||||||||||| ||| Sbjct 466101 GCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTA 466042 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || || ||||||||||| ||||| || || | ||| Sbjct 466041 ACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTCCCGGTTAAAGTT 465982 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | |||||| Sbjct 465981 TTTACGAAAATCTGCAT 465965 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||| ||||| || || | ||| ||||| || ||||||| ||| || Sbjct 466617 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCA 466558 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | || || || || | | ||| ||||| || ||||||||||| ||| Sbjct 466557 GCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTGGCTTTA 466498 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | | ||||| || || ||||||||||| ||||| || || | || Sbjct 466497 ACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTT 466438 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 466437 TTTACGAAAATTTGCAT 466421 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 ||||| |||||||| ||||| || || | ||| ||||| |||||||||| ||||| | Sbjct 465933 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGCTTT--C 465876 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || || || | || || || || | | ||| ||||| || ||||||||||| || Sbjct 465875 CAGCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTT 465816 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 | ||| | || | | | || || ||| || ||||| || |||||||| || Sbjct 465815 TAACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTATAGTTTTTCC 465764 >seq11 Length=1720574 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||||||||| ||||| || || | ||| ||||| |||||||||| ||| || Sbjct 1496435 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1496494 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | || || || || | | |||||||| || ||||| |||||| ||| Sbjct 1496495 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1496554 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || || |||||||| || ||||| || || | || Sbjct 1496555 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1496614 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || |||| |||||||| Sbjct 1496615 TTTACAAAGATTTGCATTTT 1496634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820223450169