Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq10 230 2e-55 >seq10 Length=1634725 Score = 230 bits (254), Expect = 2e-55 Identities = 570/848 (67%), Gaps = 49/848 (6%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||||||||| || |||| | |||| || |||||||| || || | Sbjct 1455793 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1455734 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATAT--ACAGCTTT---- 23318 ||| ||||| ||||| || ||||||||| | || || | | |||| Sbjct 1455733 TAAAGATATTAAGTCCATCCAACTAAATGGATT-----TTTTGAATGGAAAACTTTGGAG 1455679 Query 23319 --ACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAA 23376 || | | |||| ||| | | ||| || ||||||||||| |||||| |||| || Sbjct 1455678 CAACCTAAACATTC---TAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAG 1455623 Query 23377 TCAT-AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAAT 23435 || | | || || || |||| | || | | ||| | | ||| | |||| | Sbjct 1455622 TCTTGAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTAC 1455563 Query 23436 GGAAACAGCATCTTTAATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTT-- 23490 ||| || ||||||| ||| |||||||| ||||| || | |||||| Sbjct 1455562 TTCAACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGG--TAATT---TATTTTCC 1455508 Query 23491 AAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAAT 23550 || | || | | |||||| |||||| |||| |||||||| |||||||||||| Sbjct 1455507 AACAAGCTATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAAT 1455448 Query 23551 TCATTAGAAAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGC 23609 |||||| ||||||||| || || ||| || | ||||||||| ||||||||||||| Sbjct 1455447 TCATTACTAAATGTTAAACCATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACA 1455389 Query 23610 AAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA 23669 ||| ||| ||| || || || || ||| ||| || |||| | | | |||| Sbjct 1455388 AAAACTTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAA 1455329 Query 23670 TGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTC 23729 | || |||| |||||||| || ||| | | ||| | |||| || Sbjct 1455328 AGAG---TTCGTATCATTTATCCATTTAGCTGCCCA-TAATGCTTTATTTTTTATTGCTG 1455273 Query 23730 A-ATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCT-TCATT---ATCTGTTATATAT 23784 || ||||||| || | || | || ||| ||| || || ||| | ||||| Sbjct 1455272 GTATATTTTCAATAGCAT----GAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAA 1455217 Query 23785 GTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCA 23844 ||||||||| ||||||||| ||||||| || |||||||||| ||| || ||||| || Sbjct 1455216 TTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCA 1455157 Query 23845 TAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCG 23904 ||||| | | |||||| | ||| || || | |||||| | ||||||||||||| Sbjct 1455156 TAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCT 1455097 Query 23905 TTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA 23964 || || ||||||||||| ||||| || || || |||| ||||||||||||| ||||| Sbjct 1455096 AATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCA 1455037 Query 23965 T---CAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACT 24021 | || | |||||||| | || || | ||| |||||||||| | ||| ||| | Sbjct 1455036 TTTACATT---TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCA 1454980 Query 24022 GTCCAAAA 24029 |||||||| Sbjct 1454979 GTCCAAAA 1454972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487745774600