Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq10 125 5e-24 >seq10 Length=1594295 Score = 125 bits (138), Expect = 5e-24 Identities = 317/472 (67%), Gaps = 14/472 (3%) Strand=Plus/Minus Query 101637 TAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAA-CTGCATTTTAAGAGCA-TCAATGTG 101694 |||| ||||| ||||| |||| | || || | ||||| ||| | ||| || ||||| Sbjct 1200582 TAAGCGTTGGGAACGGG-TAGGGGATCCTGTTTAGCTGCACTTTTA-AGCTGTCTATGTG 1200525 Query 101695 ATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGT 101754 | |||| |||||||| || | | | || || |||| | ||||| || ||| Sbjct 1200524 GTTGTTGTAGACGTGAGCATTGCCCAAAATGTGTATGAACTGTGCAGGCTGTAAATTGCA 1200465 Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 || || ||||||||| || || | |||||| ||||||||| || || || || | Sbjct 1200464 CACCTGGGCAATCATGTGTGTGAATATGGAATAGGAAGCAATGTTGAAGGGGACCCCAAG 1200405 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||| ||| || |||||||||| ||||| || || ||||| | || ||||| Sbjct 1200404 ACCCAAGTCACAAGACCTTTGATACATAATGCAGGATAGTTTCCCATCGAAAACGTAAAA 1200345 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||||| ||| | ||||||||| || || |||| | | | || |||||||| || Sbjct 1200344 TTGACATAAGATATGACAAGGAGGTAATGCCATCTGATCCAAATCCTTTACATTCCATGC 1200285 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAA 101994 ||| | | || || ||| ||| || | ||||||| || || | | |||||| Sbjct 1200284 ACAAAGGATAATTCTCCTACTTGTTGGTTCATTTTTTATTAAATGGATAACATTTTTTAA 1200225 Query 101995 TTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTT--TATATTCTGCTCCGAAA 102052 |||||| || |||| ||| |||| | | || || | ||||| || || || Sbjct 1200224 TTGGTCTACACCTTTATCTTCGTAAT--TGTCATGCATGTTTGTGTATTCAGCACCAAAG 1200167 Query 102053 TGCCTCCACTGAAATCCATACACAGGT-CCAAGATCTCCTTCA--TCTCTGT 102101 || |||||||| || ||||| | ||| ||||| || |||| ||||||| Sbjct 1200166 TGTCTCCACTGGAAACCATAAATGGGTCCCAAG---TCATTCACTTCTCTGT 1200118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250504365658