Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 122 1e-22 >seq5 Length=2463301 Score = 122 bits (134), Expect = 1e-22 Identities = 361/549 (66%), Gaps = 6/549 (1%) Strand=Plus/Minus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||| || |||| |||||||| ||||| || |||||||| ||| | Sbjct 2270168 GTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTT 2270109 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 24267 |||| |||| |||||| || | | || || |||| ||| | || || || || Sbjct 2270108 CTGCTTCTTAAACCAAAAAATAG-CACAGAAACTTCCACTAAATAGGATACCCTCCACAC 2270050 Query 24268 CCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 24327 ||| ||| | | |||||| || | | | | || | ||||||||| |||| Sbjct 2270049 AGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTTATCCACTTGGCTGCCC 2269990 Query 24328 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 24387 | || || || || || || || | || || || | ||| || | || ||| Sbjct 2269989 ACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTTT 2269930 Query 24388 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 24447 | || || || | || | || || || | |||||| | || || || || |||| Sbjct 2269929 CCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTT 2269870 Query 24448 CAATGGCCATTTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTTCTA-TACA 24505 ||| || || || || ||| ||| ||| ||||| ||||| || |||| || | Sbjct 2269869 CAACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAA 2269811 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 || | | | |||||||||||| ||| ||||| ||||| ||||| || || ||||| || Sbjct 2269810 AATTTGCT-TGCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACAC 2269752 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 24625 ||||||||| |||| |||||| | | ||| ||| | |||| || | ||| |||| Sbjct 2269751 ATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGA 2269692 Query 24626 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | || | |||||| ||||||| || || || || || ||||| || | || ||| | Sbjct 2269691 CAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCACAC 2269632 Query 24686 GTCATGATA 24694 ||| |||| Sbjct 2269631 GTCTGGATA 2269623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720427399840