Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 3e-15 >seq5 Length=2463301 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || ||||| || | ||| ||||| |||||||| || ||||| |||||| Sbjct 610853 AAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAGCAAAGACTCATTTTTGCTGGCAAA 610912 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || ||| | ||| || | || ||||| || ||||||||||| || | ||| Sbjct 610913 CAATTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACGTTACAC 610972 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 |||| ||||| |||||||| || Sbjct 610973 TTGGTCTTACGTTTACGAGGTGG 610995 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || ||||| |||||||| ||||| ||||| ||||| || ||| | ||| || | || Sbjct 610427 GACCAACAGAGACTTATTTTTGCTGGCAAGCAATTAGAGGATGGAAGAACCTTGTCTGAC 610486 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || ||||||||||| || | ||| |||||||||| |||||||| || Sbjct 610487 TACAACATCCAAAAGGAATCCACCTTACACTTGGTGTTACGTTTACGAGGTGG 610539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796008959412