Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 105 7e-18 seq62 82.4 8e-11 >seq5 Length=2463301 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| || || ||||| | ||||| || | || Sbjct 610541 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 610600 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | | |||| ||||||| ||||||||||| ||||| | ||||| Sbjct 610601 GACACGATTGAAAATG-TGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCA 610659 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||||| | || |||||||| |||| || | | ||| | |||||||| Sbjct 610660 ACAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAA 610719 Query 40869 CATCCAGAAGGA 40880 |||||| ||||| Sbjct 610720 CATCCAAAAGGA 610731 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || ||||| || || ||||| | || || || | | Sbjct 610769 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 610828 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||||| ||||||||||| |||||| | || ||| Sbjct 610829 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 610888 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||| | || |||||||| | || || | | ||| | ||||||||| Sbjct 610889 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 610948 Query 40870 ATCCAGAAGGAGGCCACG 40887 ||||| ||||| ||||| Sbjct 610949 ATCCAAAAGGAATCCACG 610966 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| || |||||||| | ||||| || | || Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | | || | ||||||| ||||||||||| ||||| | ||||| Sbjct 611057 GACACGATTGAAAATG-TAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCA 611115 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| || | || |||||||| |||| || | | ||| | ||||| || Sbjct 611116 ACAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAA 611175 Query 40869 CATCCAGAAGGAGGCCAC 40886 |||||| ||||| |||| Sbjct 611176 CATCCAAAAGGAATCCAC 611193 >seq62 Length=53519 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| |||||||||||||| | || || |||||||||||| | || || || || Sbjct 26489 AAAATGCAGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCA 26430 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | | || | | ||| ||||||| || || || || ||||| | || Sbjct 26429 TCCGAAACGATTAGGAATG-TTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCTGA 26371 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || || || | || || ||| |||| || | | | ||||| Sbjct 26370 CCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTA 26311 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| |||| |||| Sbjct 26310 CAACATCCAGAAGGAGTCCACCTTGCA 26284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218182442080