Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq62 86.0 7e-12 seq5 86.0 7e-12 >seq62 Length=53519 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||| ||| |||||| || || ||||| ||||||| | || | || || Sbjct 26278 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCC 26337 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| || | |||| || | ||||||||| | || | | ||||| ||| Sbjct 26338 AACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCA 26397 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 |||||| || | || | ||| ||| | |||||||| | ||||||||||| Sbjct 26398 ATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTT 26457 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || |||| || ||||| || || |||||||| Sbjct 26458 CCGGTTAATGTTTTTACGAATATCTGCATTTT 26489 >seq5 Length=2463301 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| |||||| |||||||| || || ||| |||||||| || ||||| |||| | Sbjct 610539 CCACCTCGTAAACGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 610480 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || |||| ||||| ||||| || || |||| ||| ||||| | || Sbjct 610479 AAGGTTCTTCCATCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGG 610420 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| |||||| ||| |||| | || | | | | |||||| || ||||| Sbjct 610419 ATTCCCTCTTTGTCC-TGAATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCCAC 610361 Query 43136 ATCGACCGTGATGGTTTTGCC 43156 || | ||||||||||| || Sbjct 610360 GTCCAAAGTGATGGTTTTTCC 610340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816470660240