Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 1e-11 >seq5 Length=2463301 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || | |||||| ||| ||| || || ||||||||||| |||| | | || Sbjct 610752 AGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCT 610693 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| || ||||| || |||||||| | ||| ||||| || | | ||| ||||| Sbjct 610692 TCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTC- 610634 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | || | |||| |||| || || ||||||| ||||| | Sbjct 610633 -CTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAG 610575 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || || ||||| ||||| || || ||||| Sbjct 610574 TCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 610541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071377884480