Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 4e-13 >seq5 Length=2463301 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||| | || ||||| ||||| ||||||||||| | || ||| | | || Sbjct 610981 TAAG-ACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCAT 610923 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 | || ||||||||||| ||| | || |||||||| ||||| ||| | || || || | Sbjct 610922 CCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGT 610863 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | ||||| ||| || | | ||| |||||| | ||| || | ||||| Sbjct 610862 CCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAG 610803 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || | ||||| || ||||||||||| Sbjct 610802 TCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 610769 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||| | ||| ||||| ||||| ||||||||||| | || ||| | | |||| Sbjct 610752 AGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCT 610693 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 |||||||||||||| ||| | || ||||| ||||| || Sbjct 610692 TCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTC 610655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||| | || ||||| ||||| ||||| ||||| | || ||| | | |||| Sbjct 611208 AGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCT 611149 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||||||||| ||| | |||||||| ||||| || || | || || || || Sbjct 611148 TCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCC 611089 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | ||| ||||| | ||| || | |||||| | Sbjct 611088 TGAATTT-TCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGT 611030 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || || || ||||||||||| Sbjct 611029 CTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343269525710