Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 176 4e-39 >seq5 Length=2463301 Score = 176 bits (194), Expect = 4e-39 Identities = 930/1474 (63%), Gaps = 23/1474 (2%) Strand=Plus/Minus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||||||||| ||| ||||||| ||||| || ||||| || || || || | ||||| Sbjct 676009 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 675950 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACT 22611 ||| || ||||| || |||| ||| ||||| ||||| || |||||||| || || Sbjct 675949 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 675890 Query 22612 CTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTC---CCACATATCGTA 22668 ||| | | ||| ||||| | || | | | ||| ||| | |||||| ||| | Sbjct 675889 CTTCAATTTATCCCAATCCCA-ATATTTGTTGTC--CACCTTGACATTCCACATGTCGAA 675833 Query 22669 TTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATA-TCG 22727 || | | || | || || || || || | ||| || || || || || || | | | Sbjct 675832 CTGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTG 675773 Query 22728 CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGT 22787 | ||| ||| | | |||||| || | ||||| || || ||||| ||| | || | Sbjct 675772 TGCCAA-TTCCATGGACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTAT 675714 Query 22788 TCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCA 22847 | ||||| || | || ||| || || | | | || ||| | ||| |||| Sbjct 675713 TTAATTCCTTCGCAGAATCGGATTCATATGGGTATCTAAGAAGCATGAAGGTGTCTGCCA 675654 Query 22848 TACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCA 22907 || || || ||||| || || |||| || | || || || || ||||| ||| Sbjct 675653 AGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCTGCA 675594 Query 22908 AAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNN 22967 ||| || ||||| || || || || |||||| | || | |||||| || || Sbjct 675593 CAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTAATTT 675534 Query 22968 NNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA---ACAAACTTGTTGACGGCGA 23024 | ||| | | | | || || || ||||| ||| | |||| Sbjct 675533 CGTACAGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACGCGA 675474 Query 23025 TCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTAC 23084 | ||||| | ||| ||||||||||| |||||| ||| || ||||| | ||| || || Sbjct 675473 TGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCACAAC 675414 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | || || ||||| |||||||| ||||| || | |||||| || || || |||| Sbjct 675413 AGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAAT 675354 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 | || || | |||||| || ||||| || | ||| | | || || ||| | Sbjct 675353 CTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACCATA 675294 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACG 23264 | || || | ||| | | | | ||||||||||| || ||| ||| | | Sbjct 675293 GATCTTGCGCCAGGACAGTTTTTTTGCCCATACCTTCTTCCTCATATTTTAAGTATAGCT 675234 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 || ||||| |||| || | || | || || ||| |||| ||||| | | Sbjct 675233 TTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAG 675174 Query 23325 TCCACATTGAGTCATTTTC---AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 |||| ||| | |||||| || | |||| ||||| || || | ||||| ||| | Sbjct 675173 TCCA-ATT--CTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAGCAT 675117 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA--TCCAAAAA 23439 |||| || || | || | | |||||||| || ||| | |||| | || || | ||| Sbjct 675116 AGAAAAGGTCTCTAGCTCTTAGTTCCTCTTT-CCCGTGAT-TTTTACGAAGGTCTAGAAA 675059 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || | || | ||||| || |||| ||| || ||||| | ||| |||||| Sbjct 675058 TTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTTCC 674999 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||| || || || || || | || || | ||| |||| || ||||| ||||| | || Sbjct 674998 GCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCC 674939 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTT-TGCTCGAACGTTGTGAACGT 23618 |||||| ||| | || | | | | | ||| | ||| || | || || Sbjct 674938 GTTGGATATTCCG-TTGGTTCCTCTAATGTAGGAGTTTTGTCCTCTAATATCCTGTACCG 674880 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | || || || || ||| ||| |||| ||||| |||||||| || ||| | | Sbjct 674879 CTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAA 674820 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 | || || || || |||| | || | |||||| || |||||||||| | ||| Sbjct 674819 TACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGG 674760 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 |||| | | ||||| || || | ||||| ||||| ||| | ||||| |||| Sbjct 674759 GCGTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGAT 674700 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 ||||| || | || || | ||| | ||| || || |||| || | ||||| Sbjct 674699 GATACGTCTCTAGCGCTTTTTCCAGATCCCCAATGTGGATGCCAATGGATACTCTCATCA 674640 Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 || | ||| ||||| |||| | || || ||| | || || || | || || Sbjct 674639 GCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCA 674580 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 || || || ||||| || || || ||||| || Sbjct 674579 AAGTCTTGAACCCAAAGTAATCGTAATTAAAATC 674546 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || || || || ||||| | ||||| || | ||| Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| || ||| |||||| || || | || || ||||| Sbjct 611057 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 611116 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||||||||| |||||||| | || || || |||||| Sbjct 611117 CAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAAC 611176 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| ||||| || | || | ||||| | ||||| || ||| Sbjct 611177 ATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGGT 611224 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || || || || ||||| | ||||| || | ||| Sbjct 610541 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 610600 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| |||||| || || | || || ||||| Sbjct 610601 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 610660 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||||||||| |||||||| | || || || || ||| Sbjct 610661 CAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAAC 610720 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| || | || | ||||| | || || || |||| Sbjct 610721 ATCCAAAAGGAATCTACATTACACTTAGTACTACGTCTCAGAGGTGGTA 610769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765519611360