Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 181 1e-40 >seq5 Length=2463301 Score = 181 bits (200), Expect = 1e-40 Identities = 966/1520 (64%), Gaps = 45/1520 (3%) Strand=Plus/Minus Query 62373 AGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62432 || || ||||| ||||| ||| |||||| || || |||| |||||| ||||| Sbjct 676056 AGGTGTGGGTTCACTACGAAGAACTCTCCACTCAGAACCCTCCTGTAGTAAATGTTACTC 675997 Query 62433 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62492 || |||||||| | ||||| || || || | |||||| | || || ||||| |||||| Sbjct 675996 GTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGAAGCAGTAGGCATA 675937 Query 62493 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCC 62552 ||||||| || | |||||| | |||| | | || || | || | | ||| Sbjct 675936 GGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGCCTTCAATTTATCC 675877 Query 62553 CAATTCCAAAGATCCGACGGTACA-----ACANNNNNNNNNNNATATTGTAGAATACCGT 62607 ||| ||| || || | || || ||| | || ||||| || | Sbjct 675876 CAA-TCCCAATATTTG-TTGTCCACCTTGACATTCCACATGTCGAACTGAAGAATTCCTT 675819 Query 62608 TACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAA 62666 || || | || | ||| || || ||||| ||||| | | | || | || Sbjct 675818 GGCTAGCTGGACTACCCT-GGTAGGTCTCATAAGGTCCGTACACTTGTGCCAATTCCATG 675760 Query 62667 CTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGC- 62725 | ||| || ||| | ||||| || ||||| || || | ||||||| || | || Sbjct 675759 GACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCCTTCGCA 675700 Query 62726 --TTCCGGGCTATCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAAC 62782 || || | ||| |||| | || |||| || || || | ||| || || ||||| || Sbjct 675699 GAATC--GGAT-TCATATGGGT-ATCTAAGAAGCATGAAGGTGTCTGCCAAGCCTTGTAC 675644 Query 62783 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62842 || || || || ||||| |||||||| || || |||||| || | | ||| || || Sbjct 675643 TCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCTGCACAGGGTAGTA 675584 Query 62843 ATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTT 62902 ||| | |||||||||| | | || | ||| | |||| | || | |||||| Sbjct 675583 ATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTAATTTCGTACAGTTT 675524 Query 62903 GAGAAAA-TCAAATCGCC-----CATCTATTACAAACATGTTCAATGCAACAGATGCCAG 62956 |||| | || || || | | ||||| || ||| || | || |||| Sbjct 675523 CTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACGCGATGGAGGCCAA 675464 Query 62957 ATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 63016 |||||| ||||| || || | | | ||| | || |||||| || || ||||| Sbjct 675463 ATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCACAACAGAGGTTACT 675404 Query 63017 ACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 63076 ||| || || || || || || | ||| || ||| |||||| | ||| ||||| | Sbjct 675403 ACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAATCTTTATACAA 675344 Query 63077 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC 63136 ||| | ||| ||| ||||| |||||| || | ||| || ||| | || | || Sbjct 675343 CATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACCATAGATCTTGCGC 675284 Query 63137 CTTTATTATAGATTTG----TATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGA 63192 | | | |||| || || ||| ||| | | | |||||| | ||||| Sbjct 675283 CAGGACAGTTTTTTTGCCCATACCTTCTTCCTCAT--ATTTTAAGTATAGCTT--TTCGA 675228 Query 63193 ACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACT 63252 | || || |||||| | || | |||||||||| ||| |||||||| | ||| | Sbjct 675227 ATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAAT 675168 Query 63253 CTCCG-TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 63310 || | | || || |||| ||||| || || ||||| | ||| | ||| ||| || || Sbjct 675167 -TCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAGC-ATAGAAAAG 675110 Query 63311 ATCTCTTGTTCTATGTTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAA 63369 ||||| | ||| ||||||| ||||| || ||| || ||| || || || | | || Sbjct 675109 GTCTCTAGCTCTTAGTTCCTC-TTTCCCGTGATTTTTACGAAGGTCTAGAAATTCGAAAA 675051 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT---CCTC 63426 |||| || ||||| ||||| | ||| | || | ||| | | | ||| || | Sbjct 675050 TATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCC---CTTTCTCTTTCCGCCAC 674994 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 | || |||| |||||||| || | ||| | || |||| |||||| | | ||||| | Sbjct 674993 CTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGG 674934 Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGAC 63546 |||| || ||||| || || ||| | | ||||| | | || | Sbjct 674933 ATATTCCGTTGGTTCCTCTAATGTAGGAGTTTTGTCCTCTAATATCCTGTACCGCTACTC 674874 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | ||||| || ||| |||| || | ||||| |||| | ||| || | || |||| Sbjct 674873 CAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATACCTT 674814 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | || |||| | |||| || || |||||| |||||||| | | | || | Sbjct 674813 CAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGCGTCC 674754 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | | ||| || || ||||| | ||||| ||||| |||||| ||| | |||| |||| Sbjct 674753 CAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGATGATACG 674694 Query 63727 TCTCAATAGCTGAGTCTATAT-CCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 |||| | ||| || | || |||| || || || || | | || | ||| | || Sbjct 674693 TCTCTAGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATGGATACTCTCATCAGCAGA 674635 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 || || |||||||| | ||| || |||||| | | |||||| |||||||||| Sbjct 674634 TGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCAAAGTC 674575 Query 63846 TTAAAACCAAAATAGTTGTA 63865 || || ||||| || | ||| Sbjct 674574 TTGAACCCAAAGTAATCGTA 674555 Score = 154 bits (170), Expect = 2e-32 Identities = 366/548 (67%), Gaps = 4/548 (1%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||||||| || |||| |||||||| |||||| || |||||||| ||| | Sbjct 2270168 GTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTT 2270109 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||| |||| |||||| || | | ||| ||| ||| | ||| || || || Sbjct 2270108 CTGCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 2270049 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 33775 ||| ||| | | || ||| || | | | | || | ||||||||| ||||| Sbjct 2270048 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTTATCCACTTGGCTGCCCA 2269989 Query 33776 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33835 || || || || || || || |||| || || | ||| || | || |||| Sbjct 2269988 CAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTTTC 2269929 Query 33836 ATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33895 || || || | || | || || || | |||||| | || || || || ||||| Sbjct 2269928 CTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTTC 2269869 Query 33896 AATGGCCATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGCACTTCT-GTACAA 33953 || || ||||| || ||| ||| ||| ||||| ||||| ||||||| ||| || Sbjct 2269868 AACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAAA 2269810 Query 33954 AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACA 34013 | | | | |||||||||||| ||| ||||||||||| ||||| || || ||||| ||| Sbjct 2269809 ATTTGCT-TGCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACACA 2269751 Query 34014 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 34073 |||||||| |||| |||||| | | ||| ||| | |||| || | ||| |||| Sbjct 2269750 TGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGAC 2269691 Query 34074 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 34133 | || | |||||| ||||||| || || || || || ||||| || | || ||| | | Sbjct 2269690 AAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCACACG 2269631 Query 34134 TCATGATA 34141 || |||| Sbjct 2269630 TCTGGATA 2269623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816356110240