Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 255 5e-63 >seq5 Length=2463301 Score = 255 bits (282), Expect = 5e-63 Identities = 980/1518 (65%), Gaps = 41/1518 (3%) Strand=Plus/Minus Query 37118 TCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTA-TATATA 37176 |||| |||||||| || || || || |||||| | || || || ||| || || Sbjct 676061 TCAACAGGTGTGGGTTCACTACGAAGAACTCTCCACTCAGAACCCTCCT-GTAGTAAATG 676003 Query 37177 TTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTA 37236 || || || || ||||||| ||||| || || | | ||||| || || || |||||| Sbjct 676002 TTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGAAGCAGTA 675943 Query 37237 GGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGT 37296 ||||| ||||| | || || |||||| || || || | || || || || | | Sbjct 675942 GGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGCCTTCAAT 675883 Query 37297 TCATTCCAATCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCATATTGTAGAAT 37352 | || ||||||||| | || ||||| | || | |||||| || | || ||||| Sbjct 675882 TTATCCCAATCCCA-ATATTTGTTGTCCACCTTGACATTCCACATGTCGAACTGAAGAAT 675824 Query 37353 ACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTC 37412 |||| || |||||| | | | || ||||||||||||||||| | || || | ||| Sbjct 675823 TCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTGTGCCAATTC 675764 Query 37413 GCAACTAGAT-TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTT 37471 || | || || | || |||||||| ||||||||||||||| | |||||||| | Sbjct 675763 -CATGGACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCCT 675705 Query 37472 TTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAA 37531 | || ||| || ||| || | | | || || || ||||| || || | Sbjct 675704 TCGCAGAATCGGATTCATATGGGTATCTAAGAAGCATGAAGGTGTCTGCCAAGCCTTGTA 675645 Query 37532 CACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAAT 37591 | || || ||||||||||| ||| |||| || |||| | || ||| || || | Sbjct 675644 CTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCTGCACAGGGTAGT 675585 Query 37592 AATTGATATCTATTATTTTATTTAGATT---TTTAACTAGTATTTTCGTAATTATTCTCA 37648 |||| | ||||| |||| | | || | ||| || ||||| |||||| || Sbjct 675584 AATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAA-TA--ATTTTGGTAATTTCGTACA 675528 Query 37649 ACTTGTCGAACATAAAT--ACGTTATT----ATTAACAAATTTACTCAACGAAATAGATC 37702 || | || | ||| | || || | |||||||| | ||||| || || Sbjct 675527 GTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACGCGATGGAGG 675468 Query 37703 CTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGAT 37762 | | ||||||||| || ||||| ||| | | || | | |||||||| |||||| | Sbjct 675467 CCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCACAACAGAGGT 675408 Query 37763 TACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTAT 37822 |||| || | || || ||||| || |||| ||||| || |||||||||||||||| Sbjct 675407 TACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAATCTTTAT 675348 Query 37823 ATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTC 37882 | | || || || || |||||| ||| | | ||| | ||||| | || Sbjct 675347 ACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACCATAGA--TC 675290 Query 37883 TTGCTTTAACGATCGCTTTAAttt---ttttCTTTGTT--TCGTATTCTATATATAATTT 37937 |||| | || | ||| ||| | | || || || |||| || |||| || Sbjct 675289 TTGC-GCCAGGACAGTTTT--TTTGCCCATACCTTCTTCCTCATATTTTAAGTATAGCTT 675233 Query 37938 GTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGA 37997 | || || | ||||| || | ||| ||||||||||| || ||||| | || Sbjct 675232 TTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGT 675173 Query 37998 CCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAA 38057 ||| | | || || || ||| | | ||| || | ||||| ||||||| ||| || Sbjct 675172 CCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAGCATAGAA 675113 Query 38058 TAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAA 38117 | ||| | | ||| ||| || ||||| ||| || | | | |||||| ||||| Sbjct 675112 AAGGTCTCTAGCTCTTAGTTCCTCTTTCCCGTGATTTTTACGAAGGTCTAGAAATTCGAA 675053 Query 38118 TATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCC 38177 ||||| | |||||||||||| || || | | | | ||| ||| || | || || Sbjct 675052 AATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTTCCGCCACC 674993 Query 38178 CTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGA 38237 || | | ||||||| |||| | ||| | | || | ||| || |||| || || || Sbjct 674992 TTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGGA 674933 Query 38238 TTTGCCGTTTATAC--CGGATATATAAGTACCCTTAG--CTCGTATATTACTTATCGACA 38293 | | ||||| | | | || || ||| || | ||| |||| || || | Sbjct 674932 TATTCCGTTGGTTCCTCTAATGTAGGAGT----TTTGTCCTCTAATATCCTGTACCGCTA 674877 Query 38294 ATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 ||| |||||||| || |||||| | || | ||||| ||||| | ||| || || ||| Sbjct 674876 CTCCAATTCCACCAGC-CGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATA 674818 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 ||||| || ||| | || || || | ||||| |||||||| || || Sbjct 674817 CCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGC 674758 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || | || || || ||||| | ||| ||| | || |||||| |||| | || | Sbjct 674757 GTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGATGA 674698 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || || |||| | | || | ||| || ||| || || | ||||| ||||| ||| Sbjct 674697 TACGTCTCTAGCGCTTTTTCCAGATCCCCAATGTGGATGCCAATGGATACTCTCATCAGC 674638 Query 38533 ATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592 | ||||||||||||||| || || || ||| | ||| || || || |||| || Sbjct 674637 AGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCAAA 674578 Query 38593 GTTTTTATTCCAAAATAA 38610 || || | ||||| ||| Sbjct 674577 GTCTTGAACCCAAAGTAA 674560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523874663520