Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 129 8e-25 >seq5 Length=2463301 Score = 129 bits (142), Expect = 8e-25 Identities = 196/274 (72%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA-GC 36504 |||||| | || || || || ||||||| || || || || ||| ||| ||| || Sbjct 2269894 CTATACGTCTCTGAGTGGATATTTTCAACAGCAATCTGGAAGGAGTA-AAATTTCTTTGC 2269836 Query 36505 CTCGGTAATCTGTACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563 ||| ||||| || |||| ||| ||| | | | |||||||||||| ||| ||||| | Sbjct 2269835 CTCCGTAATTTGCACTTGGCGTAAAAATTTGCT-TGCTAAATTTTCCAACACAATTCCAT 2269777 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT 36623 |||| ||||| || || ||||| ||||||||||| |||| |||||| ||| ||| || Sbjct 2269776 CACTCGCTGCGAAGAAAGCCAACACATGTTTTATGAAATGTTTTTCATTTTCATTTAATT 2269717 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | | |||| || | ||| |||| | || | |||||| ||||||| || || || | Sbjct 2269716 TTTCGAAATCTTTCAAATCGCTAGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTT 2269657 Query 36684 CTGCCTTTTTATACATATTCCAGATGTCATGATA 36717 | || ||||| || | || ||| | ||| |||| Sbjct 2269656 CCGCTTTTTTGTAAAAATCCCACACGTCTGGATA 2269623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171500108720