Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=2463301 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||||||||| || || ||||| | ||| || || ||||| ||||| || || | Sbjct 610995 CCACCTCGTAAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGAC 610936 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || | ||||| |||||| | || || | ||||||||| || || Sbjct 610935 AAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGG 610876 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| |||| | || | | ||| | |||||| | | |||||| Sbjct 610875 ATTCCCTCTTTGTC-CTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCAC 610817 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | ||||| ||||| ||||||||| Sbjct 610816 ATCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCATA 610768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063020273600