Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 237 2e-57 >seq5 Length=2463301 Score = 237 bits (262), Expect = 2e-57 Identities = 1008/1567 (64%), Gaps = 39/1567 (2%) Strand=Plus/Minus Query 79045 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 79104 || || || || ||||| || |||||| || || |||| |||||| ||||| Sbjct 676056 AGGTGTGGGTTCACTACGAAGAACTCTCCACTCAGAACCCTCCTGTAGTAAATGTTACTC 675997 Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164 || || ||||| | || || || || || | |||||| | || || || || |||||| Sbjct 675996 GTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGAAGCAGTAGGCATA 675937 Query 79165 GGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCC 79224 ||||||| || | |||||| | |||| | || || | || | ||| Sbjct 675936 GGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGCCTTCAATTTATCC 675877 Query 79225 CAATCCCAAAGATCAGACGGG-ACA---ACATTCCAAAGATCATATTGTAGAATACCGTT 79280 ||||||||| || | | || |||||||| | || | || ||||| || | Sbjct 675876 CAATCCCAAT-ATTTGTTGTCCACCTTGACATTCCACATGTCGAACTGAAGAATTCCTTG 675818 Query 79281 ACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAAC 79339 ||||| | | | |||| ||| || ||||||||||| | | || || ||||| Sbjct 675817 GCTAGCTGGACTACCCTG-GTAGGTCTCATAAGGTCCGTACACTTGTGCCAATTCCATGG 675759 Query 79340 TCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGC-T 79398 | ||| || || | ||||| || ||||||||||| | ||||| | || | || Sbjct 675758 ACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCCTTCGCAG 675699 Query 79399 TCTAGGCTATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACC 79457 | || | ||| |||| | || |||| || || || | |||||| || ||||| || || Sbjct 675698 AATCGGAT-TCATATGGGT-ATCTAAGAAGCATGAAGGTGTCTGCCAAGCCTTGTACTCC 675641 Query 79458 AATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 79517 || || || ||||| |||||||| || || |||||| || | | ||| || ||||| Sbjct 675640 TATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCTGCACAGGGTAGTAATT 675581 Query 79518 AATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAG 79577 | |||||||||| | | || | || | |||| | || | ||||| Sbjct 675580 CCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTAATTTCGTACAGTTTCTT 675521 Query 79578 AAAATCAAATCGTCCAT------CTATTACAAACATGTTCAACGCGACAGATGCCAGATT 79631 ||||| ||| ||| | | ||||| || |||||||| || |||| ||| Sbjct 675520 AAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACGCGATGGAGGCCAAATT 675461 Query 79632 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACA 79691 ||| ||||| || || | | | ||| | || || ||| |||||||||||||| Sbjct 675460 ACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCACAACAGAGGTTACTACA 675401 Query 79692 CTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 79751 || || || || || || | ||| || ||| |||||| | ||| ||||| | || Sbjct 675400 TTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAATCTTTATACAACAT 675341 Query 79752 GAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 79811 | | ||| ||| ||||| |||||| || | ||| || ||| | || | ||| Sbjct 675340 GTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACCATAGATCTTGCGCC-- 675283 Query 79812 TATTATAGACTTGTATCTCTT---TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC 79868 | | || || | | | | |||| || |||| | |||| |||||| || Sbjct 675282 -AGGACAGTTTTTTTGCCCATACCTTCTTCCTCATATTTTAAGTATAGCTTTTCGAATTC 675224 Query 79869 GTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCC 79928 || |||||| || ||| || |||||||| | || |||||||| | ||| | Sbjct 675223 CTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTCTG 675164 Query 79929 ATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTC 79987 || || ||||||| ||||| || || ||||| | ||| | ||| ||| || || |||| Sbjct 675163 ATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAGC-ATAGAAAAGGTCTC 675105 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAATATCA 80046 | | ||| | ||||| ||||| || ||| || ||| || || || | | |||||| Sbjct 675104 TAGCTCTTAGTTCCTC-TTTCCCGTGATTTTTACGAAGGTCTAGAAATTCGAAAATATCT 675046 Query 80047 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCT 80106 || ||||| ||||| | ||| | || | |||| || || || || || ||| Sbjct 675045 GAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTTCCGCCACCTTGGTCT 674986 Query 80107 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA 80166 | |||||||| || | ||| | || |||| |||||| | | || |||||| | || Sbjct 674985 ACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGGATATTCCG 674926 Query 80167 TTGGTCCCGGAGATATAG--CTTCCACTG-GCACGAATATTACTAATTGATAGACCTATT 80223 ||||| || || ||| || || | | ||||| | | || || ||| Sbjct 674925 TTGGTTCCTCTAATGTAGGAGTT---TTGTCCTCTAATATCCTGTACCGCTACTCCAATT 674869 Query 80224 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATG 80283 || || ||| |||| || | ||||| |||| | ||| || | || || || || Sbjct 674868 CCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATACCTTCAATC 674809 Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343 |||| | |||| || || |||||| |||||||| | | || || | | Sbjct 674808 GAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGCGTCCCAGAA 674749 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 || || || ||||| | ||||| ||||| |||||| ||||| |||| |||||||| Sbjct 674748 TTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGATGATACGTCTCT 674689 Query 80404 ATAGCTGATTCTATAT-CCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTG 80462 | ||| ||| | || |||| || || || || | | || | ||| | || || || Sbjct 674688 AGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATGGATACTCTCATCAGCAGATGTTG 674630 Query 80463 AGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAA 80522 |||||||| | ||||| ||||||| | | ||| || |||||||||| || || Sbjct 674629 TGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCAAAGTCTTGAA 674570 Query 80523 ACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 80580 ||||| || | ||| | ||| ||||| ||| ||| || ||| ||| ||||| Sbjct 674569 CCCAAAGTAATCGTAATTAAAATCCCTCGT--GTAGTCAATTTCCTTGTTTAGTCTATCC 674512 Query 80581 TTATATT 80587 |||| || Sbjct 674511 TTATGTT 674505 Score = 152 bits (168), Expect = 7e-32 Identities = 368/549 (67%), Gaps = 6/549 (1%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||||||| || |||| ||||||||| ||||| || |||||||| ||| | Sbjct 2270168 GTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTT 2270109 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 |||| |||| |||||| || | | || || ||| ||| | ||| || || || Sbjct 2270108 CTGCTTCTTAAACCAAAAAATAG-CACAGAAACTTCCACTAAATAGGATACCCTCCACAC 2270050 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCC 50152 |||| ||| || | || ||| || | | | | || | ||||||||| |||| Sbjct 2270049 AGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTTATCCACTTGGCTGCCC 2269990 Query 50153 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 50212 | || || || || || || || |||| || || | ||| || | || ||| Sbjct 2269989 ACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTTT 2269930 Query 50213 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 50272 | || || || | || | || || || | |||||| | || || || || |||| Sbjct 2269929 CCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTT 2269870 Query 50273 CAATGGCCATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGCACTTCT-GTACA 50330 ||| || ||||| || ||| ||| ||| ||||| ||||| ||||||| ||| | Sbjct 2269869 CAACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAA 2269811 Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390 || | | | ||||||||||| ||| ||||| ||||| ||||| || || ||||| || Sbjct 2269810 AATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACAC 2269752 Query 50391 ATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 50450 ||||||||| ||||||||||| || ||| ||| | |||| || | ||| |||| Sbjct 2269751 ATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGA 2269692 Query 50451 TATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 50510 | || | |||||| ||||||| || || || || || ||||| || | || ||| | Sbjct 2269691 CAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCACAC 2269632 Query 50511 GTCATGATA 50519 ||| |||| Sbjct 2269631 GTCTGGATA 2269623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267381419120