Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5 105 5e-18 >seq5 Length=2463301 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||| || ||||| || | | | || |||||||||||||| |||||| Sbjct 610731 TCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAA 610672 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 || | || |||||| || | || | || ||||| || ||| || | || || | Sbjct 610671 ATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTC-CTGAATTTTGGCCTTCACATT 610613 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| | ||| ||||| | || ||||| ||||| |||||||| ||||| Sbjct 610612 TTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCAC 610553 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 610552 GAAAATTTGCAT 610541 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | || || || ||||| || | | | || |||||||||||||| |||||| Sbjct 611187 TCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAA 611128 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 || | || |||||| || | || | || ||||| || |||| | | |||| || | Sbjct 611127 ATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTC-CTGAATTTTCGCTTTTACATT 611069 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| | ||| ||||| | || || || ||||| ||||| || ||||| Sbjct 611068 TTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCAC 611009 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 611008 GAAAATTTGCAT 610997 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| ||||| || | ||| |||||||| | ||||| || ||||| || | | | || Sbjct 610981 TAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATC 610922 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || ||||||||||| |||||||| | || || ||||| | || | || ||||| || Sbjct 610921 CTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTC 610862 Query 43017 GCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075 ||| || | || || | ||| |||||| | ||| || || | || |||| Sbjct 610861 -CTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAG 610803 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| ||||| |||||||| ||||||||||| Sbjct 610802 TCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 610769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368865625164