Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 206 4e-48 >seq5 Length=2463301 Score = 206 bits (228), Expect = 4e-48 Identities = 815/1262 (65%), Gaps = 30/1262 (2%) Strand=Plus/Minus Query 71427 CTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TC 71483 ||| || || ||||||| || ||||||||||| | ||||| | || | || || Sbjct 675754 CTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCCTTCGCAGAATC 675695 Query 71484 CGGGCTATCAAATGGATAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542 || | ||| |||| || | ||||| | || || | |||||| || ||||| || || | Sbjct 675694 --GGAT-TCATATGGGTA-TCTAAGAAGCATGAAGGTGTCTGCCAAGCCTTGTACTCCTA 675639 Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 | || || |||||||||||||| || || |||||| || | | ||| || ||||| Sbjct 675638 TCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCTGCACAGGGTAGTAATTCC 675579 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 | |||||||||| | | || | || | |||| | || | ||||| || Sbjct 675578 TCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTAATTTCGTACAGTTTCTTAA 675519 Query 71663 AATCAAAT-CTCCCATCTATT-----ACAAACACGTTCAAGGCAACAGATGCCAGATTAC 71716 ||| ||| |||| | | ||||| | ||| || | || |||| ||||| Sbjct 675518 AATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACGCGATGGAGGCCAAATTAC 675459 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 | ||||| || || | | | ||| | ||||| ||| || || |||||||| | Sbjct 675458 ATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCACAACAGAGGTTACTACATT 675399 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 | || || || || || | ||| || ||| |||||| | ||| ||||| | || Sbjct 675398 TTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAATCTTTATACAACATGT 675339 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 71896 | ||| ||| ||||| |||||| || | ||| || ||| | || | ||| | Sbjct 675338 AGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACCATAGATCTTGCGCCAGGA 675279 Query 71897 TTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTC 71956 | || ||| | |||| || |||| | |||| |||||| || || | Sbjct 675278 CAGTTTTTTTGCCCATACCTTCTTCCTCATATTTTAAGTATAGCTTTTCGAATTCCTCAC 675219 Query 71957 CCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCAT 72016 |||||| | ||| || |||||||||||||| |||||||| | ||| | || | Sbjct 675218 CCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTCTGATTTT 675159 Query 72017 CATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTT 72075 | ||||||| ||||| || || ||||| | ||| | ||| ||| || || ||||| | | Sbjct 675158 CTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAGC-ATAGAAAAGGTCTCTAGCT 675100 Query 72076 CTATGCTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 || | ||||| ||||| || ||| || ||| || || || | | |||||| || || Sbjct 675099 CTTAGTTCCTC-TTTCCCGTGATTTTTACGAAGGTCTAGAAATTCGAAAATATCTGAGTG 675041 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 ||| ||||| | ||| | || | |||| | || || || || |||| || Sbjct 675040 CCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTTCCGCCACCTTGGTCTACATA 674981 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 |||||| || | ||| | || |||| |||||| | | || |||||| || ||||| Sbjct 674980 TCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGGATATTCCGTTGGT 674921 Query 72255 CCCGGAGATATAG--CTTCCACTG-GCACGAATATTGCTAATTGATAGACCTATTCCCCC 72311 || || ||| || || | | ||||| | | || || ||||| || Sbjct 674920 TCCTCTAATGTAGGAGTT---TTGTCCTCTAATATCCTGTACCGCTACTCCAATTCCACC 674864 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 ||| |||| || | ||||| |||| | ||| || | || || || || ||| Sbjct 674863 AGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATACCTTCAATCGAATC 674804 Query 72372 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 72431 | | |||| || || |||||| |||||||| | | || || | ||| || Sbjct 674803 AGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGCGTCCCAGAATTGAA 674744 Query 72432 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGC 72491 || ||||| | ||||| ||||| |||||| ||||| |||| |||||||| | || Sbjct 674743 CAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGATGATACGTCTCTAGCGC 674684 Query 72492 TGATTCTATAT-CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 | ||| | || |||| || || || || | | || | ||| | || ||| || |||| Sbjct 674683 TTTTTCCAGATCCCCAATG-TGGATGCCAATGGATACTCTCATCAGCAGATGTTGTGGTC 674625 Query 72551 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 72610 |||| | ||||| ||||||| | | |||||| |||||||||| || || |||| Sbjct 674624 TTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCAAAGTCTTGAACCCAA 674565 Query 72611 AATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATA 72668 | || | ||| | ||| ||||| ||| ||| || || ||| ||||||||| Sbjct 674564 AGTAATCGTAATTAAAATCCCTCGT--GTAGTCAATTTCCTTGTTTAGTCTATCCTTATG 674507 Query 72669 TT 72670 || Sbjct 674506 TT 674505 Score = 136 bits (150), Expect = 5e-27 Identities = 357/537 (66%), Gaps = 6/537 (1%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||||||| ||||||| |||||||| ||||| || |||||||| ||| | Sbjct 2270168 GTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTT 2270109 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 |||| |||| |||||| |||| | || || |||| ||| | ||| || || || Sbjct 2270108 CTGCTTCTTAAACCAAAAAATAG-CACAGAAACTTCCACTAAATAGGATACCCTCCACAC 2270050 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCC 42257 ||| ||| | | || ||| || | | | || | ||||||||| |||| Sbjct 2270049 AGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTTATCCACTTGGCTGCCC 2269990 Query 42258 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 42317 | || || || || || || || |||| || || | ||| || | || ||| Sbjct 2269989 ACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTTT 2269930 Query 42318 CATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTT 42377 | || || || | || | || || || | |||||| | ||||| || || |||| Sbjct 2269929 CCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTT 2269870 Query 42378 CAATGGCCATCTGAAATCCGTAGAAACATCTG-GCCTCGGTAACCTGTACTTCT-GTACA 42435 ||| || ||||| || ||| ||| ||| ||||| |||| || |||| ||| | Sbjct 2269869 CAACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAA 2269811 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || | | | ||||||||||| ||| ||||| ||||| ||||| || || ||||| || Sbjct 2269810 AATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACAC 2269752 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGA 42555 ||||||||| |||| |||||| | ||||||| | |||| || | ||| |||| Sbjct 2269751 ATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGA 2269692 Query 42556 TATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 | || | |||||| | ||||| || || ||||| || ||||| || | || ||| Sbjct 2269691 CAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCA 2269635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137874500080