Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5 100 3e-16 >seq5 Length=2463301 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||||||||| || || || || | || ||||| ||||| |||||||| || | Sbjct 610995 CCACCTCGTAAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGAC 610936 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || | |||||| |||||| | || || | ||||||||| || || Sbjct 610935 AAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGG 610876 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| |||||| || | | ||| | ||||| | | || || Sbjct 610875 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACA 610816 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || || | ||||| ||||| ||||||||| Sbjct 610815 TCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCATA 610768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013398646560