Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq10 104 3e-17 >seq10 Length=1594295 Score = 104 bits (114), Expect = 3e-17 Identities = 220/327 (67%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255 |||||| |||||| || | | || |||||||| |||||| | || |||||| Sbjct 1200258 CCAACAAGTAGGAGAATTATCCTTTGTGCATGGAATGTAAAGGATTTGGATCAGATGGCA 1200317 Query 70256 CTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTA 70315 |||| || ||||| || ||| |||||| | |||||| ||| | || ||| | Sbjct 1200318 TTACCTCCTTGTCATATCTTATGTCAATTTTACGTTTTCGATGGGAAACTATCCTGCATT 1200377 Query 70316 ATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCT 70375 |||||||| ||| | ||| |||| || || || ||||| |||||||| |||||| Sbjct 1200378 ATGTATCAAAGGTCTTGTGACTTGGGTCTTGGGGTCCCCTTCAACATTGCTTCCTATTCC 1200437 Query 70376 ATGTTGACGCACATGATTGCTCA-------CATTACCGGCCTGAAAGCGCACGAGTTCGT 70428 || || || ||||||||||| || ||| | |||| |||| ||||| | Sbjct 1200438 ATATTCACACACATGATTGCCCAGGTGTGCAATTTACAGCCT------GCAC-AGTTCAT 1200490 Query 70429 ACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACT 70488 ||||| | ||| | |||||||| || || ||||| || ||||| ||||| || Sbjct 1200491 ACACATTTTGGGCAATGCTCACGTCTACAACAACCACATAGACAGCTTAAAAGTGCAGCT 1200550 Query 70489 CGAACGGGAGCCGAGACCTTTTCCCAA 70515 ||| ||| || ||| ||||||| Sbjct 1200551 -AAACAGGATCCCCTACCCGTTCCCAA 1200576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057736408080