Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 >seq5 Length=2463301 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || ||||| || | ||| |||| ||| ||||| || |||||||| || ||||| || | | Sbjct 610995 CCACCTCGTAAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGAC 610936 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| | ||||| || ||| |||| ||||| |||||||| ||| Sbjct 610935 AAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGG 610876 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| |||||| || || | | | || || | |||| Sbjct 610875 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACA 610816 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || |||| ||||| || ||||||||||| Sbjct 610815 TCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 610769 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| || | || || | ||| || || || |||||||| || || || || | | Sbjct 611223 CCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGAC 611164 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| ||||| || ||| ||||||||||||| || || || Sbjct 611163 AAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGG 611104 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| ||||||| |||||| | | | || ||| | |||| Sbjct 611103 ATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACG 611044 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || |||| || || || ||||||||||| Sbjct 611043 TCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || ||||| || | |||||||| ||| || || || |||||||| || ||||| || | | Sbjct 610539 CCACCTCGTAAACGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 610480 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| | || || || ||| ||||||||||||| || || || Sbjct 610479 AAGGTTCTTCCATCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGG 610420 Query 18935 ACGCCCTCTTTGTCGGCAATTTT 18957 | ||||||||||| |||||| Sbjct 610419 ATTCCCTCTTTGTCCTGAATTTT 610397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572001688252