Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 163 7e-35 seq62 104 5e-17 >seq5 Length=2463301 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||||||| |||||||||||||| || || || || |||||| Sbjct 610770 ATACCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCA 610711 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| || ||||| | |||||| ||||||||||| || |||||||| ||||| Sbjct 610710 GACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGT 610651 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| |||||||| || || || |||||||| | || ||| | || Sbjct 610650 GGGATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCC 610591 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||| || || || || || || || || ||||| Sbjct 610590 ACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 610541 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | ||||||| ||||| || ||||| || || || ||||||||||| Sbjct 611223 CCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGAC 611164 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || ||||| | |||||| ||||||||||| || |||||||| ||||| || Sbjct 611163 AAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGG 611104 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| ||||| |||||||| || |||||||||||||| | || ||| | || || Sbjct 611103 ATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACG 611044 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || ||||| || || || || || || || || ||||| Sbjct 611043 TCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || ||||| || || || || |||||||| | ||||| || || |||| |||| Sbjct 610971 TGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGT 610912 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || || || |||||||| || ||||| ||||| |||||||| || Sbjct 610911 TTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTA 610852 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || |||||||| | || || | || || || | || |||||||| || || Sbjct 610851 GCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAGTCTTTCCCGTT 610792 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| Sbjct 610791 AGGGTTTTCACGAAAATTTGCAT 610769 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || ||||| || || || || |||||||| | ||||| || || |||| ||| Sbjct 610515 TGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGC 610456 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || |||||||| ||||| || ||||| ||||| |||||||| || Sbjct 610455 TTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTA 610396 Query 104477 GCTTTTACATTTTC 104490 || || |||||||| Sbjct 610395 GCCTTCACATTTTC 610382 >seq62 Length=53519 Score = 104 bits (114), Expect = 5e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||| || || ||||||| | | || | || || | || Sbjct 26284 TGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTGC 26343 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| | | | ||||||||||| || ||||| || |||||||| ||||||| ||| ||| Sbjct 26344 TTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCAATTTTT 26403 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| | || ||| | || || || || || || || || || || Sbjct 26404 GACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTT 26463 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | ||||||||| ||||||||||||||| Sbjct 26464 AATGTTTTTACGAATATCTGCATTTTG 26490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396069137864