Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5 111 1e-19 >seq5 Length=2463301 Score = 111 bits (122), Expect = 1e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| || || || |||||||| || || ||||||||||| | | Sbjct 611007 AAAATTTGCATACCACCTCGTAAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATG 610948 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || || | |||||| | ||||| || |||| || | ||||||| Sbjct 610947 TTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGC 610888 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || || || || |||||||| | |||||| ||||| || | | |||||| Sbjct 610887 TGATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCA 610828 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| || ||||| || || |||||||| || || ||||| Sbjct 610827 GATGACTCCACATCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 610769 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || | || ||||| || |||||||||||||| | | Sbjct 610779 AAAATTTGCATACCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATG 610720 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || || | ||| |||| ||||| || |||| || | ||| || Sbjct 610719 TTGTAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGT 610660 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || || || || |||||||| | |||||| ||||| || | | ||||| Sbjct 610659 TGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCG 610600 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| | ||||| || ||||| || ||||| ||||| || || ||||| Sbjct 610599 GATGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 610541 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | || ||||| || || ||||||||||| | |||||| || | Sbjct 611223 CCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGAC 611164 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||| ||||| || |||| || | ||| || || || || || Sbjct 611163 AAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGG 611104 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | |||||| || || || | | ||||| | || ||| Sbjct 611103 ATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACG 611044 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || || || ||||| || || ||||| Sbjct 611043 TCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| || || ||||||||||| || || ||||||||||| | | Sbjct 610551 AAAATTTGCATACCACCTCGTAAACGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATG 610492 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || || | |||||| | || || || |||| || | ||| || Sbjct 610491 TTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGT 610432 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || || || || |||||||| | |||||| ||||| || | | ||||| Sbjct 610431 TGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCG 610372 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | || ||||| | |||||||||||||| Sbjct 610371 GATGACTCCACGTCCAAAGTGATGGTTTTTCC 610340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290314624880