Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 134 2e-26 >seq5 Length=2463301 Score = 134 bits (148), Expect = 2e-26 Identities = 349/527 (66%), Gaps = 4/527 (1%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||||||| || |||| ||||||||| ||||| || |||||||| ||| | Sbjct 2270168 GTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTT 2270109 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||| |||| |||||| || | | ||| |||| ||| | ||| || || || Sbjct 2270108 CTGCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 2270049 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 33497 ||| ||| | | || ||| || | | | | || | ||||||||| ||||| Sbjct 2270048 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTTATCCACTTGGCTGCCCA 2269989 Query 33498 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33557 || || || || || || || |||| || || | ||| || | || |||| Sbjct 2269988 CAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTTTC 2269929 Query 33558 ATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33617 || || || | || | || || || | |||||| | || || || || ||||| Sbjct 2269928 CTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTTC 2269869 Query 33618 AATGGCCATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTTCT-GTACAA 33675 || || ||||| || ||| ||| ||| ||||| ||||| || |||| ||| || Sbjct 2269868 AACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAAA 2269810 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 | | | | || |||||||| ||| ||||| ||||| ||||| || || ||||| ||| Sbjct 2269809 ATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACACA 2269751 Query 33736 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 33795 |||||||| |||| |||||| | | ||| ||| | |||| || | ||| |||| Sbjct 2269750 TGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGAC 2269691 Query 33796 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | || | |||||| ||||||| || || || || || ||||| || Sbjct 2269690 AAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTA 2269644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945969679280