Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 244 3e-59 seq10 100 7e-16 >seq5 Length=2463301 Score = 244 bits (270), Expect = 3e-59 Identities = 608/913 (67%), Gaps = 14/913 (2%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| |||| | |||||||| ||| || ||||| | ||| | ||| | || || Sbjct 674573 AAGACTTTGGAAAGGTCCTACCTCCTTCGAATAAATGGAAAGATTATCGAAAGACCACAA 674632 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCA--TTGCCCGGATGTTGATGCCGCGATTG 363517 ||| || | ||| | || | ||||| ||||| ||| |||| | || ||| | | Sbjct 674633 CATCTGCTGATGAGAGTATCCATTGGCATCCACATTGG--GGATCTGGAAAAAGCGCTAG 674690 Query 363518 AAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCCACGCCAACAATGTACA 363574 | || ||| | ||| | || ||| || | || ||||| || || || ||| || Sbjct 674691 AGACGTATCATCTTAT--GT-CTCAAAAATATTTTACACACGCAACACCTACGTTGTTCA 674747 Query 363575 ATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATT 363634 || |||| || | | || || ||||| || || || ||||| ||||| | |||| Sbjct 674748 ATTCTGGGACGCCCAGACCGCAAATGTCGTCCTGTTTCCTTCTCTGTATGAAAGCTGATT 674807 Query 363635 CCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCG 363694 | || || ||||| || || || || || | || || || ||| ||| | || || | Sbjct 674808 CGATTGAAGGTATTTTCGAGACGCTGAAACAGTGCGCCCTGATTAGCAAAACGGCTGGTG 674867 Query 363695 GAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCAC-AGGG 363753 ||||||| ||| || | || || || | | ||| ||| |||||| | || || | | Sbjct 674868 GAATTGGAGTAGCGGTACAGGATATTAGAGGACAAAACTCCTACATTAGAGGAACCAACG 674927 Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 | ||| || || ||| | || || ||||| | ||||| | |||| || || || || Sbjct 674928 GAATA-TCCAACGGGTTAGTGCCAATGCTGAGGGTGTTCAATGATACAGCTAGATATGTA 674986 Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873 ||||| ||||| |||||| | || || | ||||| |||| |||| || || | Sbjct 674987 GACCAAGGTGGCGGAAAGAGAAAGGGATCCTTTGCAGTGTACATCGAACCATGGCACTCA 675046 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATTGCGTGCACG 363932 |||||||| || ||||| || || || ||||| ||||||||| |||||| | | || | Sbjct 675047 GATATTTTCGAATTTCTAGACCTTCGTAAAAATCACGGGAAA-GAGGAACTAAGAGCTAG 675105 Query 363933 TGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAA 363992 || || |||||||| | ||||| |||||| ||| |||||| | || | | | | | Sbjct 675106 AGACCTTTTCTATGCTGTATGGGTCCCTGACCTTTTCATGAAGAGAGTAAAAGAAAATCA 675165 Query 363993 GAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGA 364052 ||||||| | | | ||||| | ||||||||||| | || |||||||| || Sbjct 675166 GAATTGGACTTTGATGTGCCCGAATGAATGTCCAGGGTTAAGTGAGTCTTGGGGTGAGGA 675225 Query 364053 CTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGC 364112 | | |||||| ||| ||||| || || | || || || | | || Sbjct 675226 ATTCGAAAAGCTATACTTAAAATATGAGGAAGAAGGTATGGGCAAAAAAACTGTCCTGGC 675285 Query 364113 ACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTT 364172 || | |||||||||||||| || | ||||| || || || ||||| ||||| Sbjct 675286 GCAAGATCTATGGTTTGCCATTTTGCAAAGTCAGATAGAAACGGGTGTTCCCTACATGTT 675345 Query 364173 GTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAG 364232 ||| |||||||| || ||| ||||||||||| || || | || || || | || Sbjct 675346 GTATAAAGATTCTTGTAACGCGAAGTCCAACCAAAAGAACTTGGGGACGATAAAATGTAG 675405 Query 364233 CAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCT 364292 ||||| ||| ||||||||||| || || | || ||||| ||||||||||| | Sbjct 675406 TAACCTCTGTTGTGAGATTATTGAGTATACTTCCCCAGACGAAGTGGCCGTATGTAATTT 675465 Query 364293 TGCGTCGATCGCG 364305 || || |||||| Sbjct 675466 GGCCTCCATCGCG 675478 Score = 86.0 bits (94), Expect = 2e-11 Identities = 208/313 (66%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| || |||| || || || |||||||||| || |||||| Sbjct 675932 GCACCTATGCCTACTGCTTCGACGTCACAAATTCTTGGCAACAACGAGTCTTTTGAACCG 675991 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || || || |||| | | ||||||| ||||| || ||||| || Sbjct 675992 TACACGAGTAACATTTACTACAGGAGGGTTCTGAGTGGAGAGTTCTTCGTAGTGAACCCA 676051 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 |||| | ||||| || | ||| || || || |||| ||| ||||||| | | || Sbjct 676052 CACCTGTTGAAGGACCTCTTCGATCGTGGTCTCTGGGATGAGGACATGAAGCAGCAGCTC 676111 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || ||| || || ||| || | ||| | | |||| | || ||||| | Sbjct 676112 ATTGCCCACAACGGAAGTGTCCAATATATTAGCGAAATTCCTAACGACTTGAAGGAGCTC 676171 Query 364990 TACAAAACCGTATGGGAAATTTCCATGC----GAACTCTCATTGATATGGCGGCCGATCG 365045 || |||||||| ||||| || || || |||| ||||||||||||||||||| || Sbjct 676172 TATAAAACCGTTTGGGAGAT---CAAGCAGAAGAACA-TCATTGATATGGCGGCCGACCG 676227 Query 365046 CGGTGCTTTTATC 365058 || || || ||| Sbjct 676228 AGGCGCCTTCATC 676240 >seq10 Length=1594295 Score = 100 bits (110), Expect = 7e-16 Identities = 314/479 (66%), Gaps = 8/479 (2%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGT 111372 |||| || || | ||||||||| | || | | |||||| | || ||| | || | Sbjct 1199953 ATTTCCCCCTGTTAACAACAAAGAAATTATTTCTAAGGGGAATAATTGAGGAATTGCTTT 1200012 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAA-AATGTAAAAATTTGG 111431 |||| ||||| ||| ||||| | || | ||| | || || |||| ||| ||| Sbjct 1200013 GGTTCATTCGAGGAGAAACAAACGGGAAC-ACTTTGTTAAAGAAGAACGTAAGAATATGG 1200071 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTCGACAACGAAGAAGG 111490 || | ||||||| | | || || || || ||| | | || ||| |||| Sbjct 1200072 GAAGCAAATGGAACGAGGGAGTTCCTCGACAACAGGAAATTATTTC-ACAGAGAAGTGAA 1200130 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 ||| | ||||| |||| || || || ||| | ||||||||||| || |||| || ||| Sbjct 1200131 TGACTTGGGACCCATTTATGGTTTCCAGTGGAGACACTTTGGTGCTGAATACACAAACAT 1200190 Query 111551 GCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 ||| ||| || || | || || |||||| | ||||| || || ||| || Sbjct 1200191 GCATGACAATTACGAAGATAAAGGTGTAGACCAATTAAAAAATGTTATCCATTTAATAAA 1200250 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || | ||||| | | | ||||| | |||||||||| ||| | ||||| | Sbjct 1200251 AAATGAACCAACAAGTAGGAGAATTATCCTTTGTGCATGGAATGTAAAGGATTTGGATCA 1200310 Query 111671 AATGGCACTTCCACCATGTC--ATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 |||||| | || || |||| ||||||||| || ||||| || ||| |||| || Sbjct 1200311 GATGGCATTACCTCCTTGTCATATCTTATGT--CAATTTTACGTTTTCGATGGGAAACTA 1200368 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 || ||| |||||||| | ||| ||| | |||||||| || || || || ||||| Sbjct 1200369 TCCTGCATTATGTATCAAAGGTCTTGTGACTTGGGTCTTGGGGTCCCCTTCAACATTGC 1200427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350961523556