Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq62 84.2 2e-11 seq5 82.4 7e-11 >seq62 Length=53519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 || || || | ||| |||||||| || |||||||| || || | ||||| Sbjct 26278 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCC 26337 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | |||||| |||| || |||| | ||||||||| || ||||||||||| || || Sbjct 26338 AACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCA 26397 Query 131146 ATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTA 131205 ||||| ||| | | | | || |||| | ||| | || | ||| | |||||| Sbjct 26398 ATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTT 26457 Query 131206 CCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||||| ||||||||||| |||||||| Sbjct 26458 CCGGTTAATGTTTTTACGAATATCTGCAT 26486 >seq5 Length=2463301 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 145102 GTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGT 145161 |||| |||| | ||||||||||||||||| ||||| || ||||| | |||| || || Sbjct 676003 GTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGAAGCAGT 675944 Query 145162 GGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAG 145221 ||||| |||| || | ||||| | | ||||||||||| || | |||| | Sbjct 675943 AGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGCCTTCAA 675884 Query 145222 CGTACCCCAATCCC-ATA-GCGAAGTCGGCC-TCACGTCCCACATGTCGTACTGCAAAAT 145278 || ||||||||| ||| | ||| || | || | |||||||||| |||| | ||| Sbjct 675883 TTTATCCCAATCCCAATATTTGTTGTCCACCTTGACATTCCACATGTCGAACTGAAGAAT 675824 Query 145279 GCCCTCGCTGGCGGGGCTGCCTTG 145302 || | ||| || || || || || Sbjct 675823 TCCTTGGCTAGCTGGACTACCCTG 675800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011867774720