Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 120 4e-22 >seq5 Length=2463301 Score = 120 bits (132), Expect = 4e-22 Identities = 192/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 |||||| | || || || || ||||||| || || || || ||| || | ||| Sbjct 2269894 CTATACGTCTCTGAGTGGATATTTTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCC 2269835 Query 33009 TCGGTAATCTGTACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 || ||||| || |||| ||| ||| | | | |||||||||||| ||| ||||| || Sbjct 2269834 TCCGTAATTTGCACTTGGCGTAAAAATTTGCT-TGCTAAATTTTCCAACACAATTCCATC 2269776 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33127 ||| ||||| || || ||||| ||||||||||| |||| |||||| | | ||| ||| Sbjct 2269775 ACTCGCTGCGAAGAAAGCCAACACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTT 2269716 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 | |||| || | ||| |||| | || | |||||| ||||||| || || || || Sbjct 2269715 TTCGAAATCTTTCAAATCGCTAGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTC 2269656 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATA 33220 || ||||| || | || ||| | ||| |||| Sbjct 2269655 CGCTTTTTTGTAAAAATCCCACACGTCTGGATA 2269623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630748576800