Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 141 8e-29 seq62 82.4 7e-11 >seq5 Length=2463301 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || ||||||| | || |||||||| || Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| ||| |||||||| || || ||||||||| Sbjct 611057 GACACGATTGAA--AATGTAAAAGCGAAAATTCAG-GACAAAGAGGGAATCCCACCTGAC 611113 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | |||||||||| ||||||||||| ||||||| | || || || || Sbjct 611114 CAACAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTAT 611173 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| |||||||| |||| ||||| ||| | || ||||| || Sbjct 611174 AACATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGG 611223 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || || | ||||| | || |||||||| || Sbjct 610541 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 610600 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | |||| ||| |||||||| || || ||||||||||| Sbjct 610601 GACACGATTGAAAATGTGAAGGCCAAAATTCAG-GACAAAGAGGGAATCCCACCTGACCA 610659 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | |||||||| ||||||||||| ||||||| | || || || ||||| Sbjct 610660 ACAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAA 610719 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || |||| ||||| ||| | || ||||| || Sbjct 610720 CATCCAAAAGGAATCTACATTACACTTAGTACTACGTCTCAGAGGTGG 610767 Score = 122 bits (134), Expect = 8e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAA 25084 || ||| ||||||| | || |||||||| || ||||| || || ||||| | ||| Sbjct 610340 GGAAAAACCATCACTTTGGACGTGGAGTCATCCGACACAATTGAAAATGTGAAGGCTAAA 610399 Query 25085 AATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACA 25144 | ||| |||||||| || || ||||||||||||||| | |||||||||| ||||| || Sbjct 610400 ATTCAG-GACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGCA 610458 Query 25145 ATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTT 25204 |||||| |||| | || || || ||||| || ||||| |||||||| |||| || Sbjct 610459 ATTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACCTTACACTT 610518 Query 25205 AGTGCTAAGGCTAAGAGGAGG 25225 ||| || | || |||| || Sbjct 610519 GGTGTTACGTTTACGAGGTGG 610539 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || || | ||||| | || |||||||| ||| Sbjct 610769 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 610828 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | |||| ||| |||||||| || || || ||||| || Sbjct 610829 GACACAATTGAAAATGTGAAGGCTAAAATTCAG-GACAAAGAGGGAATCCCCCCTGATCA 610887 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | |||||||| |||||||||||||| |||| | || || || ||||| Sbjct 610888 GCAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAA 610947 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||||||| |||| || || || | || |||| || Sbjct 610948 CATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGG 610995 >seq62 Length=53519 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| ||||| || || ||||| ||| ||||||| | || |||||| | || Sbjct 26487 AATGCAGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCATC 26428 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || | | ||| |||||| || || ||||| || ||||||||||| Sbjct 26427 CGAAACGATTAGGAATGTTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCTGACCA 26368 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || | | | || || || || || |||| | ||||| || ||||| Sbjct 26367 GCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTACAA 26308 Query 25178 TATTCAAAAAGAATCCAC 25195 || || || || ||||| Sbjct 26307 CATCCAGAAGGAGTCCAC 26290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327165572770