Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 >seq5 Length=2463301 Score = 118 bits (130), Expect = 1e-21 Identities = 367/562 (65%), Gaps = 11/562 (2%) Strand=Plus/Minus Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 |||||| || || | |||||| ||||| || | ||| || ||||| || | || | Sbjct 2270177 AAAGTCTGTGTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATG 2270118 Query 93157 TAACA-GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 ||| || || | ||||| | |||||| || | | ||||| ||| ||| | |||| Sbjct 2270117 CAACTTGTTCT-GCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATAC 2270059 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTGCGGAATTACTGCTGAT 93273 | ||||| ||| || || || | ||| ||||| | ||| || | | || Sbjct 2270058 CCTCCACACAGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGG-----TATCGTTTAT 2270004 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| || ||||| ||||| ||||| | || | |||| || |||| ||| Sbjct 2270003 CCACTTGGCTGCCCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAA 2269944 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 |||| || || | | || |||||| | || ||||||| |||| | || Sbjct 2269943 AAGGTTCATTCTTTCCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTC 2269884 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA-GCTTCCGTGATCT 93452 || |||| ||| || | ||||| ||||| ||| ||| ||| || ||||| || | Sbjct 2269883 TGAGTGGATATTTTCAACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTT 2269825 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 |||||| | ||||| | | | | |||||| || || ||||| ||||| | Sbjct 2269824 GCACTTGGCGTAAAAATTTGCTTGCTAAATTTTCCAACACAATTCCATCACTCGCTGCGA 2269765 Query 93513 aaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGG 93572 | |||||||| | ||| ||||| |||||||| |||| || || | || || |||| Sbjct 2269764 AGAAAGCCAACACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTT 2269705 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 | ||| | || | || | |||||| | ||||| || || ||||| |||||||||| Sbjct 2269704 TCAAATCGCTAGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGT 2269645 Query 93633 ACATATCCCATATGTCTTGATA 93654 | | |||||| | |||| |||| Sbjct 2269644 AAAAATCCCACACGTCTGGATA 2269623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859700199920