Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=2463301 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || || || | || || || ||||| || |||| ||| | | Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | |||||| |||||| |||||||| || | || || ||| Sbjct 611057 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 611116 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || ||||||| ||| |||||||||||||||||| | ||| || | || ||||| Sbjct 611117 CAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAAC 611176 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| || |||| ||||| | |||||| | ||||| Sbjct 611177 ATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGG 611223 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| |||||||| || | || || ||||| || || |||| ||| |||||| Sbjct 610625 AAAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTCATTTTTGCTGGCAAA 610684 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 |||||||||||| | ||| || | || || || || ||||| ||||||||| |||| Sbjct 610685 CAATTGGAAGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCTACATTACAC 610744 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| | ||||| | ||||| Sbjct 610745 TTAGTACTACGTCTCAGAGGTGG 610767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423039185383600