Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 131 1e-25 >seq5 Length=2463301 Score = 131 bits (144), Expect = 1e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || |||| || || || ||||| | || ||||| | || Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||||| ||||| ||||| || ||||| || ||| Sbjct 611057 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 611116 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| |||||||| || || ||| | ||| | || || || ||| Sbjct 611117 CAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAAC 611176 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTT 22455 || ||||| ||||||||| |||| ||||| | || || | || |||||| |||| Sbjct 611177 ATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGGTTTTTAATTT 611233 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| |||| || || || ||||| | || ||||| | | Sbjct 610769 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 610828 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||| || || || ||||| Sbjct 610829 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 610888 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| |||||||| ||||||||| | ||| | || || |||||| Sbjct 610889 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 610948 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| |||||||| |||| || || || || || || || ||| Sbjct 610949 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGGT 610996 Score = 120 bits (132), Expect = 3e-22 Identities = 605/944 (64%), Gaps = 45/944 (5%) Strand=Plus/Minus Query 128929 TGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCC 128988 || || || |||| ||| || ||||| |||||| |||| | || ||| || || ||| Sbjct 676245 TGGTCGATGAAGGCGCCTCGGTCGGCCGCCATATCAATGATGTTCTTCTGCTTGATCTCC 676186 Query 128989 CACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTG 129048 || || ||||| || ||||| ||| || || || ||||| ||| | || || || Sbjct 676185 CAAACGGTTTTATAGAGCTCCTTCAAGTCGTTAGGAATTTCGCTAATATATTGGACACTT 676126 Query 129049 CCGTTGTTTGCAATAATTT--TGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCA 129106 ||||||| ||||| | | || ||| || | || | | | | || |||| Sbjct 676125 CCGTTGTGGGCAATGAGCTGCTGCTTC--ATGTCCTCATCCCAGAGAC-CAC---GATCG 676072 Query 129107 AATCG-TCGGTCAA---GTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGA 129162 || | || |||| || | ||| | ||| || || || || ||| | || Sbjct 676071 AAGAGGTCCTTCAACAGGTGTGGGTTCACTACGAAGAACTCTCCACTCAGAACCCTCCTG 676012 Query 129163 ACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTT 129222 ||||||||| | ||| |||| ||||| || || |||||||| | ||||| | ||| Sbjct 676011 TAGTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTC 675952 Query 129223 GTCGCGGTGGGCATGTAAGCCACGCAA-AGCGAGTTTCGCAAACCGTGCTGTTTAATGTC 129281 | || || ||||| |||| ||| ||||| |||| || ||||||| || || | Sbjct 675951 GAAGCAGTAGGCATAGGTGCCA-GCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATT 675893 Query 129282 tttttttAATTGTGTCCAGTCCCACATCGATGTGGGTG----TGTGATTCCACAAGTCGT 129337 || |||| ||| ||||| || ||| | || |||||||| |||| Sbjct 675892 CGCCTTCAATTTATCCCAATCCCA-ATATTTGTTGTCCACCTTGACATTCCACATGTCGA 675834 Query 129338 ATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCACGCCGTAAGCTT 129397 | || | || || || || ||||| ||||| || | ||||| ||| Sbjct 675833 ACTGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTT 675774 Query 129398 TTGCCAATTC---GCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGG 129454 ||||||||| | | || ||||| || || |||| ||||||||| |||| | Sbjct 675773 GTGCCAATTCCATGGACATC---TCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTT 675717 Query 129455 TGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCA---TACGCAACATGGCAAATGTGT 129511 | || || | || || ||| ||| || || || | | |||| || |||| Sbjct 675716 TATTTAATTCCTTCGCAGAATCGGATTCATATGGGTATCTAAGAAGCATG---AAGGTGT 675660 Query 129512 CGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCG 129571 | ||||| ||||| | || | || ||||||| ||| | | |||||| || ||| Sbjct 675659 CTGCCAAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCT 675600 Query 129572 ACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT-CTTGACCACAATTTTC 129630 | || || ||||| || | |||||||||| || || || | || | |||||| Sbjct 675599 CCTGCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTGTA-ATAATTTTG 675541 Query 129631 GTTACGTATTTTAACATTTC--AAAATTGTACTCGCCTACATCGATGTCGACAAATTGAT 129688 || | | | || |||| ||||||| | || ||| || | ||||||||||| Sbjct 675540 GTAA--TTTCGTACAGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATT--- 675486 Query 129689 TGACACAA----ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCG 129744 || ||||| || ||||||||||| || ||||| ||||| | | | | ||||| Sbjct 675485 TG-CACAACGCGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCA 675427 Query 129745 ACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTC 129804 | ||| || || | |||||| ||| || || ||||| | |||||| || ||| Sbjct 675426 ATAATCTCACAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTC 675367 Query 129805 ATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 ||| |||| |||||| |||| |||||| || |||||||| Sbjct 675366 GCGTTACAAGAATCTTTATACAACATGTAGGGAACACCCGTTTC 675323 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| |||| || || || ||||| | || ||||| | || Sbjct 610541 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 610600 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||| || ||||| || ||| Sbjct 610601 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 610660 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| |||||||| || || ||| | ||| | || || |||||| Sbjct 610661 CAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAAC 610720 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| ||||| || |||| ||||| Sbjct 610721 ATCCAAAAGGAATCTACATTACACTTAGT 610749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727191761270