Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 163 5e-35 seq62 125 1e-23 >seq5 Length=2463301 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || | ||| ||||||| ||||| || |||||||||||||| || || | || || Sbjct 611214 AGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTT 611155 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| || || || || || || || ||||| |||||||| ||||| || || || Sbjct 611154 CCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCT 611095 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| ||||| || || || || || || ||||| | ||| || || ||||| ||| Sbjct 611094 TTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTG 611035 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| |||||||| ||||| || ||||| Sbjct 611034 ATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || |||||||||| |||||| || ||||||||||| || || || | || || ||| Sbjct 610983 CGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCA 610924 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || || || || ||||||||||| || || || || || || || ||| Sbjct 610923 TCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTG 610864 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || ||||| || ||||| || || || ||||| | ||| || || ||||| ||||| Sbjct 610863 TCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATA 610804 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||| || ||||| || ||||| Sbjct 610803 GTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 610769 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || | ||| ||||||| || || || ||||||||||| || || || | || || Sbjct 610758 AGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTT 610699 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| || || || || || || |||||||| |||||||| ||||| || || || Sbjct 610698 CCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCT 610639 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| ||||| || ||||| || || || ||||| | ||| || || ||||| ||| Sbjct 610638 TTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTG 610579 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| || ||||| ||||| || ||||| Sbjct 610578 ATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 610541 Score = 145 bits (160), Expect = 1e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || |||||||||| ||||| || ||||||||||| || || || | || || ||| Sbjct 610527 CGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCA 610468 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| ||||| || || || || ||||| |||||||| ||||| || || || ||| Sbjct 610467 TCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTG 610408 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || ||||| || ||||| || || || ||||| | ||| || || ||||| |||||| Sbjct 610407 TCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCCACGTCCAAAGTGATG 610348 Query 68427 GTTTTTCC 68434 |||||||| Sbjct 610347 GTTTTTCC 610340 >seq62 Length=53519 Score = 125 bits (138), Expect = 1e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| | |||||||| || |||||||| || || | | ||| |||| || Sbjct 26277 TACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTC 26336 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 |||||||| || | |||| || || || ||||| ||||| || |||||||| || | Sbjct 26337 CAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTC 26396 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| |||| ||| || | || || || | || || || |||| |||||||||||| Sbjct 26397 AATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTT 26456 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468 ||| || | || || ||||||||||||||| || || Sbjct 26457 TCCGGTTAATGTTTTTACGAATATCTGCATTTTGGTA 26493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620579795760