Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5 102 6e-17 seq62 86.0 4e-12 >seq5 Length=2463301 Score = 102 bits (112), Expect = 6e-17 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 21918 AAAATTGCCGATAAAGAGGGTGT---ACCTGTAAACCAACAGAGACTTATCTTTGCTGGC 21974 |||||| || |||||||| | ||||| |||||||||||||||| ||||||||| Sbjct 610397 AAAATTCAGGACAAAGAGGGAATCCCACCTG---ACCAACAGAGACTTATTTTTGCTGGC 610453 Query 21975 AAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTT 22034 || ||| |||| ||| || ||| || | || ||||| || || |||||||| || | Sbjct 610454 AAGCAATTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACCTTA 610513 Query 22035 CATATGGTATTACGTTTACGAGGAGG 22060 || |||| |||||||||||||| || Sbjct 610514 CACTTGGTGTTACGTTTACGAGGTGG 610539 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || ||||||| || || || || |||| ||| | | Sbjct 610541 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 610600 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | || | ||| |||||| || |||||||| | ||||| || Sbjct 610601 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTG---AC 610657 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||||||||| || ||||||||||||||| | |||||| || ||| || | || ||| Sbjct 610658 CAACAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTAC 610717 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||||||||| | || | ||| ||||| | |||| || Sbjct 610718 AACATCCAAAAGGAATCTACATTACACTTAGTACTACGTCTCAGAGGTGG 610767 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || ||||||| || ||||| || |||| ||| | | Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | || | || |||||| || |||||||| | ||||| || Sbjct 611057 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTG---AC 611113 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||||||||||| ||||||||||||||| | |||||| || ||| || | || || Sbjct 611114 CAACAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTAT 611173 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAAT 22068 || || || |||||||| || | || | ||| ||||| | |||| || | ||||| Sbjct 611174 AACATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGGTTTTTAAT 611231 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| ||||||| || || || || |||| ||| | | Sbjct 610769 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 610828 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || |||||||| | || | || Sbjct 610829 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 610888 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || ||||||||||||||| |||| ||| || ||| || | || ||||| Sbjct 610889 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 610948 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| || | || |||| |||||||||||||| || Sbjct 610949 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGG 610995 >seq62 Length=53519 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| ||||| | ||||||||||| || |||||||| ||| |||| ||| || Sbjct 26490 CAAAATGCAGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGC 26431 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGT 21946 | |||||| | || ||||| |||||||| ||||| || || | ||||| Sbjct 26430 ATCCGAAACGATTAGGAATGTTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCTG- 26372 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 |||| ||||| || || | | | || || || | || ||| | | | |||| || Sbjct 26371 --ACCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGA 26314 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||| || |||||||| || || | || ||||| Sbjct 26313 CTACAACATCCAGAAGGAGTCCACCTTGCACTTGGTA 26277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124110385932