Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq10 105 6e-18 >seq10 Length=1594295 Score = 105 bits (116), Expect = 6e-18 Identities = 273/407 (67%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 20177 TCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTA 20236 ||||| || | ||||||| ||| |||| ||||| |||| || |||| | || || Sbjct 1200532 TCTATGTGGTTGTTGTAGACGTGAGCATTGCCCAAAATGTGTATGAACTGTGCAGG-CTG 1200474 Query 20237 AGACCAGTA-ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGG 20295 | | | || || |||| ||| | || || | ||||||| |||||||| || || Sbjct 1200473 TAAATTGCACACCTGGGCAATCATGTGTGTGAATATGGAATAGGAAGCAATGTTGAAGGG 1200414 Query 20296 AACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGC 20355 || || | ||||| ||| | ||||| ||||||| ||||| || | || || Sbjct 1200413 GACCCCAAGACCCAAGTCACAAGACCTTTGATACATAATGCAGGATAGTTTCCCATCGAA 1200354 Query 20356 TACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG 20415 || |||||||||||||| | ||||| || || | |||||| ||| ||| Sbjct 1200353 AACGTAAAATTGACATAAGATATGACAAGGAGGTAATGCCATCTGATCCAAATCCTTTAC 1200294 Query 20416 GTTCCACGCACACATAATGATTCTTCTA-TCGTGCGGATTATTTTTTATTAAATCCACAA 20474 ||||| ||||| | || ||||| ||| | || || | |||||||||||||| | || Sbjct 1200293 ATTCCATGCACAAAGGATAATTCTCCTACTTGT-TGGTTCATTTTTTATTAAATGGATAA 1200235 Query 20475 TGTACGACAATTGGTCAAACCCCTGGCCT--GT-ATAGTCA-GCATCCGCGTCCACGTAC 20530 | |||||||| | || | || || || |||| |||| || ||| Sbjct 1200234 CATTTTTTAATTGGTCTACACCTTTATCTTCGTAATTGTCATGCAT----GTTTGTGTAT 1200179 Query 20531 GCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATC 20577 | || |||||||| |||||||||||||| |||| |||||||| || Sbjct 1200178 TCAGCACCAAAGTGTCTCCACTGGAAACCATAAATGGGTCCCAAGTC 1200132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441371928288720