Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 125 2e-23 >seq5 Length=2463301 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| |||||||| | | || | ||| ||||| |||||||| || || || Sbjct 611188 TTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAA 611129 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| | ||||||||| ||||| ||||| ||||||||||| || || Sbjct 611128 AATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATT 611069 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| || || || || | ||||| ||||| || || || ||||| || Sbjct 611068 TTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCAC 611009 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 611008 GAAAATTTGCAT 610997 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 288276 CGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCC 288335 |||| ||| |||||||| || ||||| | | || | ||| || ||||||||||| || Sbjct 610966 CGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGTTTGCC 610907 Query 288336 TGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTT 288395 || || || || | || ||| | |||||||| ||||| ||||| ||||| || || Sbjct 610906 AGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTAGCCTT 610847 Query 288396 CACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 ||| ||||| || | || || || || || | ||||| ||||| || || || || Sbjct 610846 CACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAGTCTTTCCCGTTAGGGT 610787 Query 288456 CTTGACGAATATCTGCAT 288473 || ||||| || ||||| Sbjct 610786 TTTCACGAAAATTTGCAT 610769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652011937124