Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 seq62 89.7 6e-13 >seq5 Length=2463301 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| |||||| |||||||| || || ||| |||||||| || ||||| |||| Sbjct 610540 ACCACCTCGTAAACGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGA 610481 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | | || |||| ||||| ||||| || || |||| ||| ||||| | ||| Sbjct 610480 CAAGGTTCTTCCATCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGG 610421 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| |||||| ||| |||| | || | | | | |||||| || |||| Sbjct 610420 GATTCCCTCTTTGTCC-TGAATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCCA 610362 Query 42160 CATCGACCGTGATGGTTTTGCC 42181 | || | ||||||||||| || Sbjct 610361 CGTCCAAAGTGATGGTTTTTCC 610340 >seq62 Length=53519 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| ||||| ||| |||||| || || ||||| ||||||| | || | || || Sbjct 26278 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCC 26337 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| || | |||| || | ||||||||| | ||| | | ||||| ||| Sbjct 26338 AACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCA 26397 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 |||||| || | || | ||| ||| | |||||||| | ||||||||||| Sbjct 26398 ATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTT 26457 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || |||| || ||||| || || |||||||| Sbjct 26458 CCGGTTAATGTTTTTACGAATATCTGCATTTT 26489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211727154720