Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=2463301 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || |||||||||||||| ||||| || | |||| | ||| ||||||||||| || Sbjct 611193 GTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 611134 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || | || | || || ||||| || || || || ||||| || |||||||| ||| Sbjct 611133 GCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTT 611074 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | |||||||| ||||| || || | ||| | || || || ||||| || Sbjct 611073 ACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTC 611014 Query 45324 TTTACAAAAATTTGCAT 45340 || || ||||||||||| Sbjct 611013 TTCACGAAAATTTGCAT 610997 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || |||||||||||||| || || || | |||| | ||| ||||||||||| || Sbjct 610737 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 610678 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || | || | || || ||||| || || || || ||||| || |||||||| || Sbjct 610677 GCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTC 610618 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | |||||||| ||||| || || | ||| | || || || |||||||| Sbjct 610617 ACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTC 610558 Query 45324 TTTACAAAAATTTGCAT 45340 || || ||||||||||| Sbjct 610557 TTCACGAAAATTTGCAT 610541 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 45143 CGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCC 45202 ||| |||||||||||||| || || || | |||| | ||| || |||||||| || Sbjct 610966 CGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGTTTGCC 610907 Query 45203 TGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 45262 || | || | || |||||| || || || || || ||||| || |||||||| || Sbjct 610906 AGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTAGCCTT 610847 Query 45263 GATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGT 45322 | ||| | ||||| || ||||| || || | ||| | || || || ||||| || Sbjct 610846 CACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAGTCTTTCCCGTTAGGGT 610787 Query 45323 TTTTACAAAAATTTGCAT 45340 ||| || ||||||||||| Sbjct 610786 TTTCACGAAAATTTGCAT 610769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002307293680