Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 129 6e-25 seq62 82.4 8e-11 >seq5 Length=2463301 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || |||||||| | ||||| ||| | || Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | |||| ||||| | |||||||||||||| || | ||||| Sbjct 611057 GACACGATTGAAAATG-TAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCA 611115 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | || |||| || |||||||| |||| || | | ||| | ||||| || Sbjct 611116 ACAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAA 611175 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || | || || || || ||| ||||||| || Sbjct 611176 CATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGG 611223 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || || ||||| | ||||| ||| | || Sbjct 610541 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 610600 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | || | ||||| | |||||||||||||| || | ||||| Sbjct 610601 GACACGATTGAAAATG-TGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCA 610659 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | ||||||| || |||||||| |||| || | | ||| | |||||||| Sbjct 610660 ACAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAA 610719 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || | || || || || ||| | ||||| || Sbjct 610720 CATCCAAAAGGAATCTACATTACACTTAGTACTACGTCTCAGAGGTGG 610767 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || ||||| || || ||||| | || || ||| | | Sbjct 610769 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 610828 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||||| | |||||||||||||| ||| | || || Sbjct 610829 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 610888 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | ||||||| || |||||||| | || || | | ||| | ||||||||| Sbjct 610889 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 610948 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | ||| | || ||||| | ||||| |||| || Sbjct 610949 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGG 610995 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAA 38330 || ||||||||||| | ||||| ||| | |||||| | ||| | || | ||| Sbjct 610340 GGAAAAACCATCACTTTGGACGTGGAGTCATCCGACACAATTGAAAATGTGAAGGCTAAA 610399 Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 || | |||||||||||||| || | ||||||||| | || |||| || ||||| || Sbjct 610400 ATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGCAA 610459 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 | || || | | ||| | ||||||||||||||||||||| | || | || ||| Sbjct 610460 TTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACCTTACACTTG 610519 Query 38451 GTGCTGCGTTTGAGAGGCGG 38470 ||| | ||||| |||| || Sbjct 610520 GTGTTACGTTTACGAGGTGG 610539 >seq62 Length=53519 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 |||| |||||||| |||||||||||||| | || || |||||||||||| | || || Sbjct 26495 TTTACCAAAATGCAGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTG 26436 Query 38295 GAGGCCACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCC 38353 ||||| |||| | | | || | |||| |||||| || || || ||||| || Sbjct 26435 GAGGCATCCGAAACGATTAGGAATG-TTAAGTCAAAAATTGAGGATAAGGAAGGAATCCC 26377 Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 | ||||| ||| |||| || || | || || ||| |||| || | | | Sbjct 26376 ACCTGACCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGC 26317 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||||||| ||||| | || |||| ||||| Sbjct 26316 TGACTACAACATCCAGAAGGAGTCCACCTTGCACTTGGT 26278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171812158720