Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq10 176 2e-38 seq14 127 8e-24 seq5 125 3e-23 seq12 122 3e-22 >seq10 Length=1594295 Score = 176 bits (194), Expect = 2e-38 Identities = 262/364 (72%), Gaps = 7/364 (2%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATAT 451302 ||||||||||| || || |||||| || | ||| |||||||||| |||||| | | | Sbjct 565629 CCTGAAGAAATCTCTTCCATGGTT-TTGCAAAAGATGAAAGAAAATGCAGAAGCGTTTTT 565571 Query 451303 TGGTTC-TCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 || |||| | | ||||||| ||||| || || |||||||| |||||| ||||| Sbjct 565570 AGGAAAGTCCA-TAAAAAATGCAGTCATTACCGTGCCAGCTTATTTTAATGATTCACAAA 565512 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 ||||||| || || || ||||| |||||||||||| ||||| | ||||||| || | Sbjct 565511 GGCAAGCCACGAAGGACGCAGGTACTATTGCTGGTTTGAATGTCATGAGAATTATCAACG 565452 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 | || || ||||||||| | || ||||| || | | || ||||| || | ||||| | Sbjct 565451 AGCCAACTGCAGCTGCTATTGCTTATGGTCT-GCACAA--AAAAGGAAAGGGTGAAAAGA 565395 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | || | | || || | || ||||||||| ||| || | || | ||||| | Sbjct 565394 ACATCCTCATTTTCGACCTCGGAGGAGGAACTTTCGATGTATCCCTCCTAACGATTGAGG 565335 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 |||| | || ||||| ||||| || ||| ||||| || |||||||||||||| ||| Sbjct 565334 ATGGAATTTTCGAAGTGAAGGCCACAGCTGGAGATACGCACTTAGGAGGTGAAGATTTTG 565275 Query 451602 ATAA 451605 | || Sbjct 565274 ACAA 565271 Score = 127 bits (140), Expect = 8e-24 Identities = 422/648 (65%), Gaps = 30/648 (5%) Strand=Plus/Minus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTC 451953 ||| |||| ||||| || ||||| ||| ||||||| ||||||||| | | | Sbjct 564975 GAAGTTGTCCTTGTTGGTGGTTCCACAAGAATTCCCAAAATTCAAACACTCATTAAGGAG 564916 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATA 452013 ||||| | ||||| || || | | | || ||||||||||| ||||| || Sbjct 564915 TTCTT----TAACGGAAAGGAAGCCTGCAGATCCATCAACCCTGATGAAGCCGTTGCGTA 564860 Query 452014 TGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAA--AATTAGG---- 452067 |||||| ||||| |||||||| ||| | | ||| || || ||| || Sbjct 564859 TGGTGCAGCAGTACAAGCAGCCATTTTGTCTGGT------GACCAATCCAATGCGGTACA 564806 Query 452068 AGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAAT 452127 |||| | || | ||||||| | |||| || || | ||||| || || ||| | Sbjct 564805 AGATTTGTTGCTCTTAGATGTGTGTTCCTTATCCCTCGGTTTGGAAACCGCAGGAGGAGT 564746 Query 452128 GATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAG 452187 ||||| || | ||| | || || | || || || |||||||||| || | Sbjct 564745 TATGACCAAGCTGATTGAGAGAAATACCACCATCCCAGCAAAGAAGAGTCAAATCTTCAC 564686 Query 452188 TACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAAT 452247 ||| ||||||||||||||| || || ||||||| |||||||| | || | Sbjct 564685 TACCTATGCTGATAACCAACCAGGAGTGTTGATCCAAGTGTACGAAGGAGAGAGAGCCCT 564626 Query 452248 GACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAAC---ATTCCTCCTATGCC 452304 || || || || | || ||||| || | || || || || || Sbjct 564625 AACTAAGGACAACAACTTGTTGGGTAAATTTCACCT---AGACGGTATCCCACCAGCACC 564569 Query 452305 AAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGT 452364 || | || ||||||||| |||||| |||| ||||||| |||||||| |||||||| Sbjct 564568 GAGAAAAGTCCCACAAATTGAAGTTACCTTTGATATTGATGCTAATGGTATCCTTAATGT 564509 Query 452365 GAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAA 452423 | ||| ||||||||||| | |||||| ||||| | ||||| ||||| ||||| || Sbjct 564508 TACTGCTGTTGAAAAATCCACGGGAAAA-CAGAACCATATTACCATTACCAATGACAAGG 564450 Query 452424 ACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATG 452483 | || || |||||| ||||| ||||| | || || ||||| | ||| | | Sbjct 564449 GAAGATTGTCCCCAGAAGAAATTGACCGTATGGTGAACGACGCTGAAAAGTACAAAGCAG 564390 Query 452484 ATGATGAA-CAAGTTAGAAAACATGTTGAAGCTAAAAACAAACTAGAA 452530 | |||||| || | |||| | | ||||||| | ||||| || ||| Sbjct 564389 AAGATGAAGAAAATAAGAAGAGA-ATTGAAGCCAGAAACAGCCTCGAA 564343 >seq14 Length=2283415 Score = 127 bits (140), Expect = 8e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||||||||||| || | ||| | || ||| | | || || || || Sbjct 1528493 AAAATGAAAGAAACAGCTGAGAATTATTTGGGAAGGAAAGTACATCAAGCTGTTATCACA 1528552 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || |||||||| |||||| ||||| ||||||| || || || |||||| | ||||| Sbjct 1528553 GTACCTGCTTATTTTAATGATTCACAAAGGCAAGCCACGAAGGACGCAGGAAAAATTGCA 1528612 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||||| |||| |||||||||||||| || || || ||||| ||| |||||| ||| || Sbjct 1528613 GGTTTGGATGTGCTTCGAATTATTAACGAGCCAACCGCAGCGGCTTTAGCATTTGGGTTA 1528672 Query 451454 GGAAA 451458 | ||| Sbjct 1528673 GAAAA 1528677 >seq5 Length=2463301 Score = 125 bits (138), Expect = 3e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || || || ||| | || || || ||||| Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| |||||||| || || || ||||| || ||||| ||| Sbjct 611057 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 611116 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | ||||| | || |||||| | |||||||||||||| ||| | || ||||| Sbjct 611117 CAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAAC 611176 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || | ||||||||| || | |||||||| Sbjct 611177 ATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGG 611220 Score = 120 bits (132), Expect = 1e-21 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || ||||| ||| | || || || ||||| Sbjct 610541 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 610600 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || |||||||| || || || ||||| || ||||| ||| Sbjct 610601 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 610660 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | ||||| | || |||||| | |||||||||||||| ||| | || || || Sbjct 610661 CAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAAC 610720 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | ||| | ||||||||| || | || ||||| Sbjct 610721 ATCCAAAAGGAATCTACATTACACTTAGTACTACGTCTCAGAGG 610764 Score = 118 bits (130), Expect = 4e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || ||||| ||| | ||||| || |||||| Sbjct 610769 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 610828 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || |||||||| || || || ||||| || |||||||| Sbjct 610829 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 610888 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | ||||| | || |||||| | || ||||||||||| ||| | || || || Sbjct 610889 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 610948 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 || | ||||| | || | ||||| || ||| Sbjct 610949 ATCCAAAAGGAATCCACGTTACACTTGGTCTTA 610981 Score = 104 bits (114), Expect = 9e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 496977 TGGGATTTATATaaaaaaaTGGAAGCAGCTTTTTGGACAGCTGAAGAAATAGATTGGTCT 497036 |||||||| || |||||| |||||| | || ||||||||||||||||| || | |||| Sbjct 2269635 TGGGATTTTTACAAAAAAGCGGAAGCGTCCTTCTGGACAGCTGAAGAAATTGACTTGTCT 2269694 Query 497037 AAAGATAAACATGATTTTAAAAAATTAAATCAAGATGAACAACGATTTATTAAATATGTA 497096 | ||| | ||||| ||||||||||| || ||||| ||| || || ||| |||| Sbjct 2269695 AGCGATTTGAAAGATTTCGAAAAATTAAATGAAAATGAAAAACATTTCATAAAACATGTG 2269754 Query 497097 TTAGCAtttttttCGGCAAGTGATACAATTGT 497128 || || || || | || |||||| |||||| Sbjct 2269755 TTGGCTTTCTTCGCAGCGAGTGATGGAATTGT 2269786 >seq12 Length=1585989 Score = 122 bits (134), Expect = 3e-22 Identities = 229/334 (69%), Gaps = 11/334 (3%) Strand=Plus/Plus Query 451181 GTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA-ACTAAAACTTT 451239 ||||| || |||||||||| |||| |||| | ||||||| || | | || || Sbjct 744613 GTAAACCAGGAAGGAAAGCCAAATATAAGAGTACAG-ATAAAGGATAAGAAGACGACCTT 744671 Query 451240 TGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATA 451299 ||| || ||| |||| | |||||| | ||||||||||||| ||| || | Sbjct 744672 TGCGCCAGAACAAATCAGTGCCATGGTTTTGGAAAAAATGAAAGAAATAGCTCAATCCTT 744731 Query 451300 TATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACA 451359 | | || ||||||| | ||||| | || || || || || |||||||||||||| Sbjct 744732 TTTGGGAAAGCCAGTTAAAAACGCAGTTGTAACAGTACCAGCCTACTTCAATGATGCACA 744791 Query 451360 ACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAA 451419 | |||||||| || || |||||| ||||| |||||||| || |||| ||||| || Sbjct 744792 GAGACAAGCAACAAAGGACGCAGGAACCATTGCAGGTTTAAACATTGTTCGTATTATAAA 744851 Query 451420 TGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaa 451479 |||||| || ||||| ||| | || || || | | | ||||| ||||| | Sbjct 744852 TGAACCAACTGCAGCAGCTTTGGCTTACGGTTTGG-------ACAAGAA--GGAAGAGAC 744902 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||||| || | ||||| || ||||||||| Sbjct 744903 GAGCATTTTGGTCTACGATTTAGGAGGAGGAACT 744936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975714400405064