Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 152 6e-32 seq4 87.8 2e-12 seq11 84.2 3e-11 >seq5 Length=2463301 Score = 152 bits (168), Expect = 6e-32 Identities = 962/1533 (63%), Gaps = 32/1533 (2%) Strand=Plus/Plus Query 111711 CACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTC 111770 ||||||||||| || | ||||| |||| || || ||||| |||||||| |||||| Sbjct 674726 CACGCAACACCTACGTTGTTCAATTCTGGGACGCCCAGACCGCAAATGTCGTCCTGTTTC 674785 Query 111771 CTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCC 111830 ||| | | || | ||||| || | || |||| || || || | | || ||| Sbjct 674786 CTTCTCTGTATGAAAGCTGATTCGATTGAAGGTATTTTCGAGACGCTGAAACAGTGCGCC 674845 Query 111831 CAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAG 111890 | || || ||||||||| || || | | || ||| | |||| |||| Sbjct 674846 CTGATTAGCAAAACGGCTGGTGGAATTGGAGTAGCGGTACAGGATATTAGAG--GACAAA 674903 Query 111891 TCTCGT--ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTAT 111948 ||| | |||||||| || || || ||| | || | | |||||||| | || | Sbjct 674904 ACTCCTACATTAGAGGAACCAACGGAATATCCAACGGGTTAGTGCCAATGCTGAGGGTGT 674963 Query 111949 TTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCG---TCGCAAGGGATCTATCGCAG 112005 | || | ||||| | |||||| |||||| ||| | | |||||||| | |||| Sbjct 674964 TCAATGATACAGCTAGATATGTAGACCAAGGTGGCGGAAAGAGAAAGGGATCCTTTGCAG 675023 Query 112006 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 112065 | || | || ||||||||| | ||||| | || || || || | ||| || || | Sbjct 675024 TGTACATCGAACCATGGCACTCAGATATTTTCGAATTTCTAGACCTTCGTAAAAATCACG 675083 Query 112066 GTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTC 112124 | | ||||| | | || | || || |||| ||| | ||| | || || || ||| Sbjct 675084 GGAAAGAGGA-ACTAAGAGCTAGAGACCTTTTCTATGCTGTATGGGTCCCTGACCTTTTC 675142 Query 112125 ATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGT 112184 ||||||||||| | || | | |||||| || | | || || | | || || Sbjct 675143 ATGAAGAGAGTAAAAGAAAATCAGAATTGGACTTTGATGTGCCCGAATGAATGTCCAGGG 675202 Query 112185 CTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGT 112244 | || | ||||||||| || ||| || ||| ||| || ||||||||| || Sbjct 675203 TTAAGTGAGTCTTGGGGTGAGGAATTCGAAAAGCTATACTTAAAATATGAGGAAGAAGGT 675262 Query 112245 CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACC 112304 || | || || | || ||| | ||| || ||| | | ||| | Sbjct 675263 ATGGGCAAAAAAACTGTCCTGGCGCAAGATCTATGGTTTGCCATTTTGCAAAGTCAGATA 675322 Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 || || ||| || || ||| | || ||||| | |||||| ||| || |||||| Sbjct 675323 GAAACGGGTGTTCCCTACATGTTGTATAAAGATTCTTGTAACGCGAAGTCCAACCAAAAG 675382 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 || ||||| ||| || || ||||||||| || || | || | ||| | | Sbjct 675383 AACTTGGGGACGATAAAATGTAGTAACCTCTGTTGTGAGATTATTGAGTATACTTCCCCA 675442 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 || || ||| || ||||| | || || ||||| | ||| | ||| || | | Sbjct 675443 GACGAAGTGGCCGTATGTAATTTGGCCTCCATCGCGTTGTGCAAATTTGTCGA-CGTGGA 675501 Query 112485 ACAAAGA-CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCT 112543 | || || ||| ||| | | ||||| ||||| |||| |||| | | ||| ||| | Sbjct 675502 AAAAGGAGAATTCAATTTTAAGAAACTGTACGAAATTACCAAAATTATTACACGTAACTT 675561 Query 112544 AAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATAT 112600 || | |||| || || |||| ||||| || ||| ||| || ||| || | Sbjct 675562 GGACCAAATTATAGAGAGGAATTACTACCCTGTGCAGGAGGCTGAACG---ATCCAACAA 675618 Query 112601 GAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCG 112660 ||||||| | || || || | || || ||||| | || || ||||| ||| | | Sbjct 675619 GAGACACAGACCCATAGGGATAGGAGTACAAGGCTTGGCAGACACCTTCATGCTTCTTAG 675678 Query 112661 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTA 112720 || ||| ||| ||||| ||||||||| | ||| | || || || |||||||| Sbjct 675679 ATACCCATATGAATCCGATTCTGCGAAGGAATTAAATAAAAGAATTTTCGAAACAATGTA 675738 Query 112721 TCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 112780 | | || ||| | ||| | ||| |||||| | || | || || ||||| |||| Sbjct 675739 TTATGCTGCTTTGGAGATGTCCATGGAATTGGCACAAGTGTACGGACCTTATGAGACCTA 675798 Query 112781 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG-----GAAGGTGAG 112835 ||||| ||||||| ||||| | ||||| || || |||||| |||||| | Sbjct 675799 CCAGGGTAGTCCAGCTAGCCAAGGAATTCTTCAGTTCGACATGTGGAATGTCAAGGTG-G 675857 Query 112836 ACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 112895 | ||| | | || ||||| | |||| || ||| || | || | | Sbjct 675858 A-CAACAAATATTGGGATTGGGATAAATTGAAGGCGAATATAAAGAAGCACGGGTTAAGA 675916 Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 112955 || || || ||||||| ||||| || || || || ||||||| | || || || Sbjct 675917 AATTCGCTCCTGCTGGCACCTATGCCTACTGCTTCGACGTCACAAATTCTTGGCAACAAC 675976 Query 112956 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 113015 || | |||||||| ||||||| ||||| || || || || |||||||| Sbjct 675977 GAGTCTTTTGAACCGTACACGAGTAACATTTACTACAGGAGGGTTCTGAGTGGAGAGTTC 676036 Query 113016 GTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGAT 113075 | | || ||| || || || | |||||| || |||||||||| |||| Sbjct 676037 TTCGTAGTGAACCCACACCTGTTGAAGGACCTCTTCGATCGTGGTCTCTGGGATGAGGAC 676096 Query 113076 ATGA---AGGATCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCC 113131 |||| || | |||| || | | ||| | || ||| ||||| || ||||| Sbjct 676097 ATGAAGCAGCAGCTCATTGCCCACAACGGAAGTGTC----CAATATATTAGCGAAATTCC 676152 Query 113132 AGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGA 113191 | || | ||| || | || || |||||||| |||||| |||| | ||||||| Sbjct 676153 TAACGACTTGAAGGAGCTCTATAAAACCGTTTGGGAGATCAAGCAGAAGAACATCATTGA 676212 Query 113192 CATGGCCGCAGATCGTGGTCGCTTCATTGATCA 113224 ||||| || || || || |||||| || || Sbjct 676213 TATGGCGGCCGACCGAGGCGCCTTCATCGACCA 676245 >seq4 Length=3285730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGAC 16114 ||| || |||||||| ||||||||||||||||| ||||| || |||| | || | Sbjct 1890082 TCCAACTGCATCAATTTCATCAATGAAGACGATACATGGCGCATGTTTTTTG---GCTGC 1890026 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 || ||||| || | || | |||| || ||||| || ||||| ||| |||| | | Sbjct 1890025 TTGGAAGAGCTCTCTTATCCTTCTGGCACCAACACCTACGAACATTTCCTCAAATTCGGA 1889966 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 | | || ||| ||||| || ||||| | ||| ||||| || |||| || | | || Sbjct 1889965 GCCTGATGCTTGTATGAAAGGAACATTCGCTTCCCCCGCTATCGCTCTAGCAATTAACGT 1889906 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 || || ||||| || | ||| | ||||| Sbjct 1889905 TTTTCCTGTACCCGGTTCACCGGACAGGAG 1889876 >seq11 Length=1094695 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 171440 TACGAAGGCGCTACCGTCCTTGAAGC-ACAAAAGGGAGCGTATTATACACCAATTACAGC 171498 |||||||| |||||||| | ||| | | ||||||| | || | ||| ||| | | Sbjct 21930 TACGAAGGAGCTACCGTTTTAGAACCCATAAAAGGGTACTACATAGA-ACCCATTTCGAC 21988 Query 171499 TCTAGATTTTGAAGCACTGTACCCATCTATCATGATGGCACACAATCTGTGTTATTCATC 171558 || ||||||| | | |||||||||||||||||||| |||||||||||||| || || | Sbjct 21989 GCTCGATTTTGCATCCCTGTACCCATCTATCATGATAGCACACAATCTGTGCTACTCCAC 22048 Query 171559 GTATGTCA 171566 || |||| Sbjct 22049 GTTGGTCA 22056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741174033760