Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5 149 7e-31 >seq5 Length=2463301 Score = 149 bits (164), Expect = 7e-31 Identities = 543/838 (65%), Gaps = 19/838 (2%) Strand=Plus/Minus Query 110374 CCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||||||||| || || || || | ||| || | ||| ||||| | |||||| || | Sbjct 675390 CCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAATCTTTATACAACATGTAGGGAACA 675331 Query 110434 CCAGTTTCCGTCTGTGACTTG--AGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTG 110491 || ||||| |||| |||| | |||||| ||||| ||| || |||||||| Sbjct 675330 CCCGTTTCTATCTG--ACTTTGCAAAATGGCAAACCATAGATCTTGCGCCAGGACAGTTT 675273 Query 110492 CGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACA 110551 || | | |||||| ||||| || || ||| | | || ||||||| || | Sbjct 675272 TTTTGCCCATACCTTCTTCCTCATATTTTAAGTATAGCTTTTCGAATTCCTCACCCCAAG 675213 Query 110552 CATCAGAAAGACCCTTCGCCTTG--TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTC 110609 ||| | ||||| | || ||||| || | | | |||||| | || | Sbjct 675212 ACTCACTTA-ACCCTGGACATTCATTCGGG-CACATCAAAGTCCAATTCTGATTTTCTTT 675155 Query 110610 AACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAG 110668 || ||||||||||| |||||||| | ||| | || |||||||||| | || || Sbjct 675154 TACTCTCTTCATGAAAAGGTCAGGGACCCATACAGCATAGAAAAGGTCTCTAGCTCTTAG 675095 Query 110669 --CCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCA 110726 |||||| || || || || || || || | ||| || | ||||| |||||||| Sbjct 675094 TTCCTCTT--TC-CCGTGATTTTTACGAAGGTCTAGAAATTCGAAAATATCTGAGTGCCA 675038 Query 110727 TGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACCCGCC----TGGTTAACATAGC 110782 |||||||| || || || | ||||||||| | | ||||| |||| ||||| | Sbjct 675037 TGGTTCGATGTACACTGCAAAGGATCCCTTTCT-CTTTCCGCCACCTTGGTCTACATATC 674979 Query 110783 GTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTAC 110842 ||||| ||||||| ||||| ||||| || | | || | |||| || || || | Sbjct 674978 TAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGGATATTCCGTTGGTTC 674919 Query 110843 CCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCC 110902 | ||||| ||| || | | | ||| || || | | ||||| ||||| ||| Sbjct 674918 CTCTAATGTAGGAGTTTTGTCCTCTAATATCCTGTACCGCTACTCCAATTCCACCAGCCG 674859 Query 110903 ACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCT 110962 || ||||| | || |||| | | || || | ||||||| ||||||||||| || | Sbjct 674858 TTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATACCTTCAATCGAATCAGCTT 674799 Query 110963 TGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTG 111022 | | | || || || || ||||| || || | ||||| || | |||||| | | Sbjct 674798 TCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGCGTCCCAGAATTGAACAACG 674739 Query 111023 TAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGG 111082 ||||||| || || | || ||| ||||| | || || || || || Sbjct 674738 TAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGATGATACGTCTCTAGCGCTTTTT 674679 Query 111083 GTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGA 111142 | ||| | ||| || ||||||| |||| ||| | || || ||| || |||||| Sbjct 674678 CCAGATCCCCAATGTGGATGCCAATGGATACTCTCATCAGCAGATGTTGTGGTCTTTCGA 674619 Query 111143 TTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | | |||||||| | || | ||||| | | || | ||||||| |||||||| Sbjct 674618 TAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCAAAGTCTTGAACCCAAAGTA 674561 Score = 100 bits (110), Expect = 3e-16 Identities = 375/573 (65%), Gaps = 14/573 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || |||||||| ||| || ||||| ||||||||| |||||| ||| | | Sbjct 2270167 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACT-TGTT 2270109 Query 119568 CTT-TTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 || ||||| | |||||| || ||||| ||||||||| ||| | ||| ||||||||||| Sbjct 2270108 CTGCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 2270049 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCC 119685 ||| || | || | || ||||| | || | | | || | ||||||| |||| Sbjct 2270048 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTA-TCGTTTATCCACTTGGCTGCCC 2269990 Query 119686 AGTTGGCCTTACGCTCTA-TGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGC-TTCTT 119743 | || || || | ||| ||| | | ||| || || | ||||| | | ||||| Sbjct 2269989 ACAACGCTTTGTTCTTCACTGC-GGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTT 2269931 Query 119744 TTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCAT 119803 | | | | ||||| || || || || || | || ||||| || | | Sbjct 2269930 TCCTTCTCG-TCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATT 2269872 Query 119804 TTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTT--CGTCA 119861 |||| ||| ||| |||||| || || | ||||||||||| ||| | Sbjct 2269871 TTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAA 2269812 Query 119862 GCAAAATTG-TTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAA 119920 ||| ||| ||| | | |||||| || ||||||||||| | |||||||| || || Sbjct 2269811 --AAATTTGCTTGCTAA-ATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAA 2269755 Query 119921 GATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTT 119980 | | |||||||| | | |||||| || || | | ||| | || | || ||| | Sbjct 2269754 CACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCT 2269695 Query 119981 AGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCA 120040 ||||||||| | ||||||||||||||| ||| | || ||||| || | ||||| Sbjct 2269694 AGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCA 2269635 Query 120041 AAGTTCAGGATACTTCAGGGGAAAAACGGTGAA 120073 | || |||||| | |||| | | |||||| Sbjct 2269634 CACGTCTGGATACAAAATGGGATACAAGGTGAA 2269602 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 168406 GATGAGTCCCTCACGTTTTTACACTTACCACGGAGTGGAAATACCCCATAATGATCTCTA 168465 |||| |||||||||||| | || || | || || |||||||| | |||||| Sbjct 853919 GATGCATCCCTCACGTTTAGTAATTTTCCCTTCAAGGGGAACACCCCATACTTATCTCTC 853860 Query 168466 CCCACGACGGAGAGACCAGCGACAGCGAGA-GTTTTCGCTGAATCACCCTCTGTCACGAT 168524 ||||| | ||| | ||||| | ||| || || || || ||||||||||| || | ||| Sbjct 853859 CCCACTATGGATAATCCAGCTA-AGCAGGATGTCTTAGCAGAATCACCCTCCGTAAGGAT 853801 Query 168525 GAGTGTACACTTTCCAGACTGTGC--CGTACCAGCTTTGTTCGCATCGTCCAATTTGGGG 168582 ||||||||| ||| |||||||| | || || | ||| ||||| |||| ||| || Sbjct 853800 GAGTGTACA--ATCCTGACTGTGCTTACTTCCCGCATCGTTTGCATCCTCCAGTTTTGGT 853743 Query 168583 ATACCA 168588 || ||| Sbjct 853742 ATTCCA 853737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974836772400