Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq62 95.1 3e-14 seq9 89.7 1e-12 >seq62 Length=53519 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||||||| || || || ||||| || || | | || |||| || | |||||| ||| Sbjct 26290 GTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTGCTTTCCT 26349 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 | | || || | || ||||| || || || ||||| || || | ||||||| ||| Sbjct 26350 GAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCAATTTTTGACTTA 26409 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||| ||| || || || ||||| || ||||| | || ||||| || || ||| Sbjct 26410 ACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTTAATGTT 26469 Query 195124 TTTACGAACACTTGCATTTATGGT 195147 |||||||| | ||||||| |||| Sbjct 26470 TTTACGAATATCTGCATTT-TGGT 26492 >seq9 Length=854567 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 125523 CCTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAA 125582 |||||| || |||||||| || ||||| ||| ||| || ||||||| |||||| || Sbjct 384911 CCTTCCCAAAAAACACGGAAGAGGAGGTCAAAGTGCGTTACGTTTTGCCAGACTTAGATT 384852 Query 125583 AGAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACTCAATGTTTTTTGCA 125642 |||||| |||||||| ||||| || ||||| || || || ||| ||||||| | Sbjct 384851 AGAAAAAAGACACAATTATTTAAGAAAAGTTGCTGAAGTAGCTACTTC-TGTTTTTATAA 384793 Query 125643 -AGACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAA 125701 | | ||||| |||||| || || ||| |||| ||| ||||| ||||| | Sbjct 384792 CAAATGACAAGATCAACGTGTCAGGAATAGTCCTTGCCGGAAGTGCAGACTTCAAGAATG 384733 Query 125702 AGCTTCTGGAATCTGACCTTTTCGACCAAAG 125732 | || || | ||| | ||||||||||| Sbjct 384732 ACCTCATGCATAGTGATATGTTCGACCAAAG 384702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479353993186